@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1312: (2018-01-09 )
MYDTIIIGAGPAGMTAALYAARSNLKVALIEGGLPGGQMNNTSDIENYPGYANISGPELAEKMFEPLENLGVEHIYGYVENVEDHGDFKKVMTDDQTYETRTVIVATGSKHRPLGVPGEEELNSRGVSYCAVCDGAFFRDQDLLVVGGGDSAVEEALFLTRFAKTVTIVHRRDQLRAQKVLQDRAFANEKISFIWDSVVKEIKGENRVESVVFENVKTGQVTEQAFGGVFIYVGLDPLSDFVKELNIQDQAGWIVTDSHMKTAVDGIFAVGDVRLKDLRQVTTAVGDGAIAGQEAYKFITEHS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_7(3F8R)
?
[Raw transfer]



NAP_D_11(3F8R)
?
[Raw transfer]



NAP_C_9(3F8R)
?
[Raw transfer]



NDP_A_3(4A5L)
?
[Raw transfer]



NDP_A_3(4A65)
?
[Raw transfer]



ACY_B_9(3F8P)
?
[Raw transfer]



ACY_B_8(3F8D)
?
[Raw transfer]



CIT_C_11(3ITJ)
TRXB1_YEAST
[Raw transfer]



CIT_D_14(3ITJ)
TRXB1_YEAST
[Raw transfer]



FAD_A_2(5MIT)
?
[Raw transfer]



FAD_A_2(5MIS)
?
[Raw transfer]



FAD_A_2(5MIQ)
?
[Raw transfer]



FAD_A_2(5MIP)
?
[Raw transfer]



FAD_A_2(5MIT)
?
[Raw transfer]



FAD_A_2(5MIR)
?
[Raw transfer]



FAD_A_2(5MH4)
?
[Raw transfer]



FAD_B_7(5MJK)
?
[Raw transfer]



FAD_D_11(5MJK)
?
[Raw transfer]



FAD_A_3(4GCM)
TRXB_STAAW
[Raw transfer]



FAD_A_2(5UWY)
?
[Raw transfer]



FAD_A_5(5MJK)
?
[Raw transfer]



FAD_B_8(4GCM)
TRXB_STAAW
[Raw transfer]



FAD_C_9(5MJK)
?
[Raw transfer]



FAD_A_2(5UWY)
?
[Raw transfer]
1 PsiBlast_PDB 94.6070% -85 - C1 -5UWY 9.3 ?
88 HHSearch 94.3172% -85 - C1 -5UWY 9.3 ?
22 PsiBlast_CBE 90.9067% -71 - C1 -5MJK 12.5 ?
8 PsiBlast_PDB 90.7867% -71 - C1 -5MJK 12.6 ?
21 PsiBlast_CBE 90.6467% -71 - C1 -5MJK 12.4 ?
23 PsiBlast_CBE 90.3067% -70 - C1 -5MJK 12.5 ?
7 PsiBlast_PDB 89.6667% -62 - C1 -5MIT 12.3 ?
6 PsiBlast_PDB 89.2167% -64 - C1 -5MIS 12.7 ?
2 PsiBlast_PDB 89.0767% -64 - C1 -5MH4 11.9 ?
4 PsiBlast_PDB 88.8667% -64 - C1 -5MIQ 12.2 ?
5 PsiBlast_PDB 88.4267% -64 - C1 -5MIR 11.9 ?
3 PsiBlast_PDB 88.2767% -63 - C1 -5MIP 11.9 ?
9 PsiBlast_PDB 86.8952% -67 - C1 -4GCM 13.3 TRXB_STAAW
95 HHSearch 86.2153% -62 - C1 -4GCM 13.2 TRXB_STAAW
90 HHSearch 83.1467% -24 - C1 -5MIT 12.3 ?
29 PsiBlast_CBE 79.6141% -45 - C1 -3F8P - ? -
28 PsiBlast_CBE 78.7441% -48 - C1 -3F8R 8.6 ?
87 HHSearch 78.7240% -46 - C1 -3F8D - ? -
32 PsiBlast_CBE 78.5440% -45 - C1 -3F8D - ? -
91 HHSearch 78.2941% -46 - C1 -3F8P - ? -
26 PsiBlast_CBE 76.4041% -45 - C1 -3F8R 8.0 ?
27 PsiBlast_CBE 73.5341% -46 - C1 -3F8R 7.5 ?