@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1321: (2018-01-09 )
MKIGILALQGAFAEHAKVLDQLGVESVELRNLDDFQQDQSDLSGLILPGGESTTMGKLLRDQNMLLPIREAILSGLPVFGTCAGLILLAKEITSQKESHLGTMDMVVERNAYGRQLGSFYTEAECKGVGKIPMTFIRGPIISSVGEGVEILAIVNNQIVAAQEKNMLVSSFHPELTDDVRLHQYFINMCKEKS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GLN_X_(2NV2)
PDXT_BACSU
[Raw transfer]
1 PsiBlast_PDB 96.1649%-103 - C1 -4WXY - PDXT_GEOKA -
33 HHSearch 95.0151%-120 - C1 -1Q7R - PDXT_GEOSE -
3 PsiBlast_PDB 92.6148%-119 - C1 -1Q7R - PDXT_GEOSE -
2 PsiBlast_PDB 91.3851% 0 - C- -2ISS - PDXT_THEMA -
21 PsiBlast_CBE 89.1744% -94 - C1 -2NV2 3.6 PDXT_BACSU
6 PsiBlast_PDB 88.2144% -89 - C1 -2NV2 - PDXT_BACSU -
36 HHSearch 85.7849% 0 - C- -2ISS - PDXT_THEMA -
35 HHSearch 85.7849% 0 - C- -2ISS - PDXT_THEMA -
7 PsiBlast_PDB 85.7344% -89 - C1 -1R9G - PDXT_BACSU -
4 PsiBlast_PDB 83.6846% -78 - C1 -2YWD - PDXT_THET8 -
37 HHSearch 83.1046% -74 - C1 -2YWD - PDXT_THET8 -
5 PsiBlast_PDB 80.7645% -97 - C- -2NV0 - PDXT_BACSU -
8 PsiBlast_PDB 80.6738% -98 - C1 -2YWJ - PDXT_METJA -
32 HHSearch 79.2744%-117 - C- -2NV0 - PDXT_BACSU -
39 HHSearch 74.3634% -49 - C1 -2ABW - PDX2_PLAF7 -
38 HHSearch 71.8532% -50 - C1 -4ADS - PDX2_PLAF7 -
34 HHSearch 70.2836% -92 - C1 -2YWJ - PDXT_METJA -
9 PsiBlast_PDB 67.3531% -67 - C1 -2ABW - PDX2_PLAF7 -
10 PsiBlast_PDB 66.5930% -46 - C1 -4ADS - PDX2_PLAF7 -
45 HHSearch 53.4723% -15 - C1 -2YWC - GUAA_THET8 -