@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1332: (2018-01-09 )
MNTYQLNNGVEIPVLGFGTFKAKDGEEAYRAVLEALKAGYRHIDTAAIYQNEESVGQAIKDSGVPREEMFVTTKLWNSQQTYEQTRQALEKSIEKLGLDYLDLYLIHWPNPKPLRENDAWKTRNAEVWRAMEDLYQEGKIRAIGVSNFLPHHLDALLETATIVPAVNQVRLAPGVYQDQVVAYCREKGILLEAWGPFGQGELFDSKQVQEIAANHGKSVAQIALAWSLAEGFLPLPKSVTTSRIQANLDCFGIELSHEERETLKTIAVQSGAPRVDDVDF

Atome Classification :

(34 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(3D3F)
GR_BACSU
[Raw transfer]




NAD_C_3(1M9H)
DKGA_CORSC
[Raw transfer]




NAP_A_3(4GIE)
PGFS_TRYCC
[Raw transfer]




NDP_A_3(4G5D)
PGFS_LEIMA
[Raw transfer]




NDP_A_3(4G5D)
PGFS_LEIMA
[Raw transfer]




NDP_B_4(4G5D)
PGFS_LEIMA
[Raw transfer]




NAP_A_3(4GIE)
PGFS_TRYCC
[Raw transfer]




NAP_B_2(1A80)
DKGA_CORSC
[Raw transfer]




NDP_B_4(3D3F)
GR_BACSU
[Raw transfer]




NAP_B_2(1A80)
DKGA_CORSC
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_C_3(1VBJ)
PGFS_TRYBB
[Raw transfer]




NAP_D_4(1VBJ)
PGFS_TRYBB
[Raw transfer]




GLU_A_3(4FZI)
PGFS_TRYCC
[Raw transfer]




EDO_B_20(4F40)
PGFS_LEIMA
[Raw transfer]




EDO_A_10(4F40)
PGFS_LEIMA
[Raw transfer]




GLU_B_4(4FZI)
PGFS_TRYCC
[Raw transfer]




EDO_A_3(4GAC)
AK1A1_MOUSE
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




GOL_H_8(1MZR)
DKGA_ECOLI
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




CIT_E_5(1VBJ)
PGFS_TRYBB
[Raw transfer]




CIT_F_6(1VBJ)
PGFS_TRYBB
[Raw transfer]




GOL_D_12(3O0K)
?
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




GOL_C_10(3O0K)
?
[Raw transfer]




TLT_A_3(3S3G)
ALDR_HUMAN
[Raw transfer]




C2U_A_7(3CV7)
AK1A1_PIG
[Raw transfer]




DMF_A_4(3V35)
ALDR_HUMAN
[Raw transfer]




EPR_A_2(4JIH)
AK1BA_HUMAN
[Raw transfer]




2BA_A_2(5UXF)
?
[Raw transfer]




1BO_A_6(2VDG)
ALDR_HORVU
[Raw transfer]




EDO_B_23(4F40)
PGFS_LEIMA
[Raw transfer]




EDO_B_23(4F40)
PGFS_LEIMA
[Raw transfer]




NAP_B_2(1AE4)
AK1A1_PIG
[Raw transfer]




NAP_B_2(1CWN)
AK1A1_PIG
[Raw transfer]




4 PsiBlast_PDB 93.7051% -84 - C8 -3D3F 11.5 GR_BACSU
24 PsiBlast_CBE 92.9551% -90 - C8 -3D3F 11.3 GR_BACSU
5 PsiBlast_PDB 92.1751% -84 - C8 -3F7J - GR_BACSU -
128 HHSearch 91.6252% -79 - C8 -3F7J - GR_BACSU -
22 PsiBlast_CBE 90.5147% -70 - C8 -4G5D 12.8 PGFS_LEIMA
23 PsiBlast_CBE 90.4547% -75 - C8 -4F40 2.9 PGFS_LEIMA
3 PsiBlast_PDB 90.4047% -69 - C8 -4G5D 12.3 PGFS_LEIMA
117 HHSearch 90.0749% -95 - C8 -1VBJ 12.2 PGFS_TRYBB
2 PsiBlast_PDB 89.9247% -71 - C8 -4F40 2.4 PGFS_LEIMA
122 HHSearch 89.5147% -82 - C8 -4G5D 12.3 PGFS_LEIMA
1 PsiBlast_PDB 89.0349% -99 - C8 -1VBJ 12.2 PGFS_TRYBB
121 HHSearch 88.8547% -86 - C8 -4F40 2.9 PGFS_LEIMA
124 HHSearch 88.3748% -62 - C8 -4GIE 12.7 PGFS_TRYCC
115 HHSearch 87.7844% -62 - C8 -4MHB - ? -
114 HHSearch 87.7444% -64 - C8 -4MHB - ? -
21 PsiBlast_CBE 87.6649% -93 - C8 -1VBJ 10.9 PGFS_TRYBB
8 PsiBlast_PDB 87.4944% -65 - C8 -4Q3M - ? -
26 PsiBlast_CBE 87.4447% -99 - C8 -4FZI 2.3 PGFS_TRYCC
134 HHSearch 87.1746% -92 - C8 -3O0K 2.0 ?
125 HHSearch 86.7941% -97 - C8 -2WZM - Y2407_MYCS2 -
7 PsiBlast_PDB 86.5847% -73 - C8 -4GIE 12.7 PGFS_TRYCC
33 PsiBlast_CBE 85.7245% -88 - C8 -3O0K 2.9 ?
6 PsiBlast_PDB 85.5247% -71 - C8 -4FZI 2.6 PGFS_TRYCC
9 PsiBlast_PDB 84.9745% -87 - C8 -3O0K 2.8 ?
34 PsiBlast_CBE 84.5545% -90 - C8 -3O0K 2.0 ?
32 PsiBlast_CBE 84.4445% -86 - C8 -3O0K 2.8 ?
120 HHSearch 83.2643% -54 - C8 -1A80 11.2 DKGA_CORSC
15 PsiBlast_PDB 82.9642% -51 - C8 -1A80 11.4 DKGA_CORSC
18 PsiBlast_PDB 81.3841% -51 - C8 -1M9H 9.0 DKGA_CORSC
13 PsiBlast_PDB 79.8642% -58 - C8 -1MZR 2.2 DKGA_ECOLI
43 PsiBlast_CBE 75.2137% 10 - C8 -3CV7 3.5 AK1A1_PIG
20 PsiBlast_PDB 72.9737% 9 - C8 -4GAC 2.6 AK1A1_MOUSE
45 PsiBlast_CBE 70.3337% - - C8 -1CWN 2.8 AK1A1_PIG
44 PsiBlast_CBE 70.3037% - - C8 -1AE4 2.6 AK1A1_PIG