@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1335: (2018-01-10 )
MKFSPLCWIVPSIYVIMKEGFKIGKGVFMLKLGVIGTGAISHHFIEAAHTSGEYQLVAIYSRKLETAATFASRYQNIQLFDQLEVFFKSSFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEKNNCFIFEAARNYHEKAFTTIKNFLADKQVLGADFNYAKYSSKMPDLLAGQTPNVFSDRFAGGALMDLGIYPLYAAVRLFGKANDATYHAQQLDNSIDLNGDGILFYPDYQVHIKAGKNITSNLPCEIYTTDGTLTLNTIEHIRSAIFTDHQGNQVQLPIQQAPHTMTEEVAAFAHMIQQPDLNLYQTWLYDAGSVHELLYTMRQTAGIRFEAEK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_8(4NHE)
?
[Raw transfer]




NAP_A_4(4NHE)
?
[Raw transfer]




NAP_B_8(4NHE)
?
[Raw transfer]




NAP_C_14(4NHE)
?
[Raw transfer]




22 PsiBlast_CBE 79.00100%-123 - C2 -4NHE 9.9 ?
1 PsiBlast_PDB 78.15100%-123 - C2 -4NHE 9.8 ?
21 PsiBlast_CBE 77.84100%-123 - C2 -4NHE 10.0 ?
51 HHSearch 75.3997% -70 - C2 -4NHE 9.5 ?
2 PsiBlast_PDB 71.1998%-138 - C- -2HO5 - ? -
42 Fugue 42.5121% -9 * C2 *2O4U - DHDH_MACFA -
57 HHSearch 42.2023% -42 - C2 -3E9M - ? -
56 HHSearch 42.1923% -44 - C2 -3E9M - ? -
4 PsiBlast_PDB 40.5426% -49 - C2 -3E9M - ? -
70 HHSearch 39.8715%-347 - C2 -3OQB - ? -
60 HHSearch 39.5616% -38 - C2 -3DB2 - ? -
54 HHSearch 39.4221% -2 - C2 -3OHS - DHDH_MACFA -
59 HHSearch 39.1919% -1 - C2 -4HAD - ? -
55 HHSearch 38.9521% 2 - C2 -2POQ - DHDH_MACFA -
64 HHSearch 38.5815% -34 - C2 -5UHW - ? -
65 HHSearch 37.8615% -38 - C2 -5UI9 - ? -
62 HHSearch 36.9619% -10 - C2 -3KUX - ? -
61 HHSearch 35.8915% -16 - C2 -3M2T - ? -
43 Fugue 35.1419% 23 - C2 -1YDW - Y4967_ARATH -
58 HHSearch 34.2224% -44 - C- -3EVN - ? -