@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1343: (2018-01-10 )
MAKEKYDRSKPHVNIGTIGHVDHGKTTLTAAITTVLARRLPSSVNQPKDYASIDAAPEERERGITINTAHVEYETEKRHYAHIDAPGHADYVKNMITGAAQMDGAILVVASTDGPMPQTREHILLSRQVGVKHLIVFMNKVDLVDDEELLELVEMEIRDLLSEYDFPGDDLPVIQGSALKALEGDSKYEDIVMELMNTVDEYIPEPERDTDKPLLLPVEDVFSITGRGTVASGRIDRGIVKVNDEIEIVGIKEETQKAVVTGVEMFRKQLDEGLAGDNVGVLLRGVQRDEIERGQVIAKPGSINPHTKFKGEVYILTKEEGGRHTPFFNNYRPQFYFRTTDVTGSIELPAGTEMVMPGDNVTIDVELIHPIAVEQGTTFSIREGGRTVGSGMVTEIEA

Atome Classification :

(57 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_3(1HA3)
EFTU1_THET8
[Raw transfer]




GDP_A_5(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LBV)
EFTU1_THETH
[Raw transfer]




GDP_B_6(1EFC)
EFTU1_ECOLI
[Raw transfer]




GNP_A_2(4LBW)
EFTU1_THETH
[Raw transfer]




GDP_A_3(5JBQ)
?
[Raw transfer]




GDP_A_6(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_H_6(1DG1)
EFTU2_ECOLI
[Raw transfer]




GTP_A_3(3VMF)
EF1A_AERPE
[Raw transfer]




GNP_A_2(4RD4)
IF2G_SULSO
[Raw transfer]




GNP_A_2(4RCZ)
IF2G_SULSO
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_3(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(2C78)
EFTU1_THET8
[Raw transfer]




GNP_A_2(4LBZ)
EFTU1_THETH
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




GNP_P_9(1B23)
EFTU_THEAQ
[Raw transfer]




GDP_B_(1D8T)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(1HA3)
EFTU1_THET8
[Raw transfer]




GDP_G_5(1DG1)
EFTU2_ECOLI
[Raw transfer]




GNP_A_3(1EXM)
EFTU1_THETH
[Raw transfer]




GNP_B_6(2BVN)
EFTU2_ECOLI
[Raw transfer]




GNP_A_2(4LC0)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4H9G)
EFTU1_THETH
[Raw transfer]




GNP_A_2(4LBY)
EFTU1_THETH
[Raw transfer]




GDP_A_3(3U2Q)
?
[Raw transfer]




GDP_K_10(4IW3)
EFTU1_PSEPK
[Raw transfer]




GNP_A_5(1OB2)
EFTU2_ECOLI
[Raw transfer]




GDP_B_8(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_4(4P3Y)
?
[Raw transfer]




GNP_A_3(1EFT)
EFTU_THEAQ
[Raw transfer]




GDP_A_5(3U6K)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(3U6K)
?
[Raw transfer]




GDP_A_4(4G5G)
EFTU1_ECOLI
[Raw transfer]




GDP_A_7(1TUI)
EFTU_THEAQ
[Raw transfer]




GNP_B_7(4PC6)
?
[Raw transfer]




GDP_A_3(2FX3)
EFTU1_ECOLI
[Raw transfer]




GDP_C_9(1TUI)
EFTU_THEAQ
[Raw transfer]




GDP_A_3(1ETU)
EFTU1_ECOLI
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GNP_A_4(1KK1)
IF2G_PYRAB
[Raw transfer]




GDP_A_5(4ZV4)
EFTU_PSEAE
[Raw transfer]




GDP_A_4(1KK2)
IF2G_PYRAB
[Raw transfer]




GDP_A_2(4RD6)
IF2G_SULSO
[Raw transfer]




GDP_B_7(4IW3)
EFTU1_PSEPK
[Raw transfer]




GDP_A_4(1KK3)
IF2G_PYRAB
[Raw transfer]




GNP_A_3(4PC7)
EFTU1_ECOLI
[Raw transfer]




GDP_B_7(4ZV4)
EFTU_PSEAE
[Raw transfer]




GNP_A_4(3QSY)
IF2G_SULSO
[Raw transfer]




GCP_B_6(3I1F)
IF2G_SULSO
[Raw transfer]




FMT_A_12(4RJL)
IF2G_SULSO
[Raw transfer]




GDP_A_3(1EFM)
EFTU2_ECOLI
[Raw transfer]




35 PsiBlast_CBE 92.8072%-105 - C2 -4PC3 - EFTU1_ECOLI -
30 PsiBlast_CBE 92.3172% -95 - C2 -1DG1 8.4 EFTU2_ECOLI
37 PsiBlast_CBE 92.2372%-102 - C2 -4PC2 - ? -
51 PsiBlast_CBE 92.0972% -95 - C2 -1D8T 8.9 EFTU1_ECOLI
46 PsiBlast_CBE 91.8372% -93 - C2 -1EFC 8.8 EFTU1_ECOLI
41 PsiBlast_CBE 91.7072% -96 - C2 -4P3Y 9.7 ?
20 PsiBlast_PDB 91.4673% -88 - C2 -4G5G 8.6 EFTU1_ECOLI
52 PsiBlast_CBE 91.3672% -89 - C2 -1D8T 8.7 EFTU1_ECOLI
28 PsiBlast_CBE 91.1873% -90 - C2 -3U6K 6.9 ?
18 PsiBlast_PDB 90.8173% -91 - C2 -3U6K 7.4 EFTU1_ECOLI
29 PsiBlast_CBE 90.7072% -90 - C2 -1DG1 7.4 EFTU2_ECOLI
36 PsiBlast_CBE 90.6672%-109 - C2 -4PC3 - EFTU1_ECOLI -
38 PsiBlast_CBE 90.6472%-108 - C2 -4PC2 - ? -
45 PsiBlast_CBE 90.5672% -88 - C2 -1EFC 8.5 EFTU1_ECOLI
19 PsiBlast_PDB 90.2373% -94 - C2 -3U2Q 7.2 ?
31 PsiBlast_CBE 90.2072% -91 - C2 -5JBQ 9.2 ?
40 PsiBlast_CBE 89.3872%-107 - C2 -4PC1 - ? -
34 PsiBlast_CBE 89.3672%-105 - C2 -4PC6 - ? -
33 PsiBlast_CBE 89.2972%-101 - C2 -4PC6 6.9 ?
49 PsiBlast_CBE 89.1372% -88 - C2 -2FX3 7.0 EFTU1_ECOLI
44 PsiBlast_CBE 88.2472% -93 - C2 -2BVN 8.7 EFTU2_ECOLI
43 PsiBlast_CBE 87.8572% -94 - C2 -2BVN 9.1 EFTU2_ECOLI
42 PsiBlast_CBE 86.8773% -84 * C2 *1OB2 6.6 EFTU2_ECOLI
32 PsiBlast_CBE 82.3472% -97 - C2 -4PC7 7.7 EFTU1_ECOLI
4 PsiBlast_PDB 80.7370% -18 - C2 -1EXM 9.6 EFTU1_THETH
54 PsiBlast_CBE 80.6268% -17 - C2 -4ZV4 6.7 EFTU_PSEAE
117 HHSearch 80.4972% -14 - C2 -2C78 9.6 EFTU1_THET8
16 PsiBlast_PDB 80.0570% -13 - C2 -4LBZ 9.6 EFTU1_THETH
2 PsiBlast_PDB 79.9870% -11 - C2 -4H9G 9.7 EFTU1_THETH
17 PsiBlast_PDB 79.9070% -14 - C2 -4LC0 9.8 EFTU1_THETH
1 PsiBlast_PDB 79.8570% -15 - C2 -2C78 9.6 EFTU1_THET8
53 PsiBlast_CBE 79.8368% -18 - C2 -4ZV4 4.7 EFTU_PSEAE
13 PsiBlast_PDB 79.6270% -13 - C2 -4LBV 9.6 EFTU1_THETH
14 PsiBlast_PDB 79.5670% -12 - C2 -4LBW 9.7 EFTU1_THETH
12 PsiBlast_PDB 79.5670% -20 - C2 -1EFT 9.2 EFTU_THEAQ
3 PsiBlast_PDB 79.3670% -18 - C2 -2C77 9.7 EFTU2_THET8
58 PsiBlast_CBE 78.7668% -22 - C2 -4IW3 7.6 EFTU1_PSEPK
15 PsiBlast_PDB 78.6270% -12 - C2 -4LBY 9.5 EFTU1_THETH
59 PsiBlast_CBE 78.5468% -23 - C2 -4IW3 6.5 EFTU1_PSEPK
9 PsiBlast_PDB 77.7070% -11 - C2 -1B23 8.9 EFTU_THEAQ
8 PsiBlast_PDB 76.6970% -20 - C2 -1TUI 6.7 EFTU_THEAQ
22 PsiBlast_CBE 76.1870% -18 - C2 -1TUI 6.1 EFTU_THEAQ
23 PsiBlast_CBE 75.4770% -17 - C2 -1TUI 6.8 EFTU_THEAQ
21 PsiBlast_CBE 74.5670% -16 - C2 -1HA3 8.3 EFTU1_THET8
5 PsiBlast_PDB 74.3070% -11 - C2 -1HA3 9.2 EFTU1_THET8
50 PsiBlast_CBE 53.7172%-127 - C2 -1ETU 4.8 EFTU1_ECOLI
140 HHSearch 43.1433% 32 - C2 -1KK1 8.0 IF2G_PYRAB
108 Fugue 39.1132% 43 - C2 -1KK1 8.0 IF2G_PYRAB
90 PsiBlast_CBE 35.0931% 40 - C2 -1KK2 7.5 IF2G_PYRAB
89 PsiBlast_CBE 34.3431% 33 - C2 -1KK3 7.5 IF2G_PYRAB
91 PsiBlast_CBE 33.4531% 38 - C2 -1KK1 8.1 IF2G_PYRAB
96 PsiBlast_CBE 32.0534% 5 - C2 -4RCZ 8.4 IF2G_SULSO
94 PsiBlast_CBE 31.5834% 2 - C2 -4RD6 7.8 IF2G_SULSO
95 PsiBlast_CBE 30.7034% 8 - C2 -4RD4 8.1 IF2G_SULSO
104 PsiBlast_CBE 25.5134% 2 - C2 -3I1F 4.4 IF2G_SULSO
60 PsiBlast_CBE 20.4571% - - C2 -1EFM 2.4 EFTU2_ECOLI
103 PsiBlast_CBE 19.2034% 25 - C2 -3QSY 4.9 IF2G_SULSO