@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1376: (2018-01-10 )
MGKYDFTSLPNRLGHHTYKWKETETDSEVLPAWIADMDFVVLPEIHQAVQTYADQLVYGYTYASEDLIKEVQKWEATQYGYNFDKEALVFIEGVVPAISTAIQTFTKEGEAVLINTPVYPPFARSVKLNNRRLITNSLVEKDSLFEIDFDQLEKDLVEEEVKLYVLCNPHNPGGRVWEKEVLEKIGQLCQKHGVLLVSDEIHQDLTLFGHKHQSFNTINPAFKNFAIVLSSATKTFNIAGTKNSYAVIENPKLRLAFQKRLLANNQHEISGLGYLATEAAYRYGKDWLEELKQVFEDHINYVVDLFGKETKIKVMKPQGTYLIWLDFSAYDLTDETLQELLRNEAKVILNRGLDFGEEGSLHARINIAMPKSLLQEVCQRIVATFAKC

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PLP_B_4(3L8A)
?
[Raw transfer]



PLP_A_3(3L8A)
?
[Raw transfer]



PLP_B_4(3L8A)
?
[Raw transfer]



PLP_A_3(3L8A)
?
[Raw transfer]



PLP_B_10(4DGT)
?
[Raw transfer]



PLP_A_3(4DQ6)
?
[Raw transfer]



PLP_A_3(4DGT)
?
[Raw transfer]



PLP_A_3(4DQ6)
?
[Raw transfer]



PLP_B_6(4DQ6)
?
[Raw transfer]



EDO_A_14(3FDB)
?
[Raw transfer]
23 PsiBlast_CBE 98.4169% -77 - C1 -3B1E - ? -
26 PsiBlast_CBE 97.5369% -78 - C1 -3B1D - ? -
2 PsiBlast_PDB 97.3369% -75 - C1 -3B1D - ? -
22 PsiBlast_CBE 97.1769% -77 - C1 -3B1E - ? -
28 PsiBlast_CBE 97.1669% -73 - C1 -3B1C - ? -
29 PsiBlast_CBE 97.0369% -75 - C1 -3B1C - ? -
25 PsiBlast_CBE 96.9269% -76 - C1 -3B1D - ? -
3 PsiBlast_PDB 96.7969% -73 - C1 -3B1E - ? -
24 PsiBlast_CBE 96.6469% -76 - C1 -3B1D - ? -
1 PsiBlast_PDB 96.5169% -73 - C1 -3B1C - ? -
27 PsiBlast_CBE 96.4469% -78 - C1 -3B1C - ? -
21 PsiBlast_CBE 96.3069% -76 - C1 -3B1E - ? -
58 HHSearch 91.9868% -8 - C1 -3B1D - ? -
57 HHSearch 91.6768% -5 - C1 -3B1E - ? -
30 PsiBlast_CBE 88.6056%-100 - C1 -3L8A 3.1 ?
4 PsiBlast_PDB 88.4256%-100 - C1 -3L8A 3.1 ?
65 HHSearch 85.7956% -55 - C1 -3L8A 3.1 ?
66 HHSearch 85.7756% -53 - C1 -3L8A 3.1 ?
60 HHSearch 80.0035% -65 - C1 -3DZZ - ? -
61 HHSearch 78.7735% -62 - C1 -3DZZ - ? -
63 HHSearch 77.3238% 27 - C1 -4DQ6 3.9 ?
7 PsiBlast_PDB 73.3338% 29 - C1 -4DQ6 3.9 ?
31 PsiBlast_CBE 73.1438% 30 - C1 -4DQ6 3.8 ?
32 PsiBlast_CBE 73.0238% 33 - C1 -4DGT 3.9 ?
6 PsiBlast_PDB 71.8138% 32 - C1 -4DGT 4.0 ?
12 PsiBlast_PDB 71.1430% -79 - C1 -3FDB 2.8 ?