@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1389: (2018-01-11 )
MSKILVFGHQNPDSDAIGSSVAFAYLAKEAYGLDTEAVALGTPNEETAFVLNYFGVEAPRVITSAKAEGAEQVILTDHNEFQQSVSDIAEVEVYGVVDHHRVANFETASPLYMRLEPVGSASSIVYRMFKEHGVAVPKEIAGLMLSGLISDTLLLKSPTTHPTDKIIAPELAELAGVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELNGNNVRVAQVNTVDIAEVLERQAEIEAAMQAANESNGYSDFVLMITDIVNSNSEILALGANMDKVEAAFNFKLENNHAFLAGAVSRKKQVVPQLTESFNA

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2PN_A_6(2ENX)
PPAC_STRA5
[Raw transfer]



2PN_B_11(2ENX)
PPAC_STRA5
[Raw transfer]



2PN_A_6(2ENX)
PPAC_STRA5
[Raw transfer]



2PN_A_9(2IW4)
PPAC_BACSU
[Raw transfer]



2PN_A_21(2HAW)
PPAC_BACSU
[Raw transfer]



2PN_B_22(2HAW)
PPAC_BACSU
[Raw transfer]



2PN_B_20(2IW4)
PPAC_BACSU
[Raw transfer]



2PN_B_20(2IW4)
PPAC_BACSU
[Raw transfer]



GOL_B_11(1K20)
PPAC_STRGC
[Raw transfer]



GOL_A_12(1K20)
PPAC_STRGC
[Raw transfer]



GOL_A_12(1K20)
PPAC_STRGC
[Raw transfer]



GOL_A_12(1K20)
PPAC_STRGC
[Raw transfer]



GOL_B_13(1K20)
PPAC_STRGC
[Raw transfer]
1 PsiBlast_PDB 88.8294%-101 - C4 -1WPP - PPAC_STRGC -
18 PsiBlast_CBE 87.8293% -86 - C4 -1K20 2.5 PPAC_STRGC
24 Fugue 87.6393% -83 - C4 -1K20 2.7 PPAC_STRGC
2 PsiBlast_PDB 87.6393% -83 - C4 -1K20 - PPAC_STRGC -
3 PsiBlast_PDB 86.5385% -91 - C4 -2ENX 3.3 PPAC_STRA5
19 PsiBlast_CBE 85.3985% -86 - C4 -2ENX 3.4 PPAC_STRA5
4 PsiBlast_PDB 82.3379% -86 - C4 -1I74 - PPAC_STRMU -
34 HHSearch 76.8884% 14 - C4 -2ENX 3.3 PPAC_STRA5
6 PsiBlast_PDB 73.9955% -90 - C4 -2HAW 4.1 PPAC_BACSU
7 PsiBlast_PDB 73.9055% -90 - C4 -2IW4 4.0 PPAC_BACSU
5 PsiBlast_PDB 73.5555% -92 - C4 -1WPM - PPAC_BACSU -
21 PsiBlast_CBE 73.4055% -90 - C4 -1WPM - PPAC_BACSU -
20 PsiBlast_CBE 72.9155% -89 - C4 -2HAW 4.2 PPAC_BACSU
22 PsiBlast_CBE 72.7355% -88 - C4 -2IW4 4.3 PPAC_BACSU
33 HHSearch 72.4754% -87 - C4 -2IW4 4.3 PPAC_BACSU
8 PsiBlast_PDB 70.0654%-112 - C4 -1K23 - PPAC_BACSU -
38 HHSearch 66.8984% 10 - C4 -1K20 2.6 PPAC_STRGC
26 Fugue 60.7394%-112 - C4 -1K20 2.8 PPAC_STRGC
45 HHSearch 54.1757%-121 - C4 -1WPN - PPAC_BACSU -
10 PsiBlast_PDB 54.1157%-114 - C4 -1WPN - PPAC_BACSU -
27 Fugue 44.8491% -98 - C4 -1K20 2.4 PPAC_STRGC