@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1399: (2018-01-11 )
MKLSNRVLEMEESVTLAAGARAKALKAEGRDILSLTLGEPDFTTPKNIQDAAIASIRDGRASFYTVTSGLPELKAVVNSYFERFYGYSVASNQVTVAAGAKYSLYTFFMAVVNPGDEVIIPTPYWVSYGDQVKMAEGVPVFVSAKEDNHFKVTVEQLEAARTDKTKVLVLNSPSNPTGMIYTREELLAIGNWAVENDILILADDIYGRLVYNGHEFTPISSLSEAIRKQTVVINGVSKTYAMTGWRIGYAVGEADIIAAMSKIAGQTTSNPSAVAQYAAVEALSGEQDTVESMRQAFEERLNTIYPLLAEVPGFEVVKPQGAFYLFPNVKKAMEMKGYTDVTDFTTAILEEAEVALVTGAGFGAPENVRLSYATDLDTLKEAVERLKAFMGSEND

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ASP_D_4(1GCK)
AAT_THET8
[Raw transfer]



PLP_E_5(1GDE)
?
[Raw transfer]



PLP_E_5(1GDE)
?
[Raw transfer]



GLU_D_4(1GDE)
?
[Raw transfer]



PLP_F_6(1GDE)
?
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_B_13(1O4S)
AAT_THEMA
[Raw transfer]



PLP_F_6(1GCK)
AAT_THET8
[Raw transfer]



PLP_B_4(1GD9)
?
[Raw transfer]



GLU_C_3(1GDE)
?
[Raw transfer]



PLP_A_12(1O4S)
AAT_THEMA
[Raw transfer]



PLP_A_3(1GD9)
?
[Raw transfer]



PLP_A_5(1B5O)
AAT_THET8
[Raw transfer]



ASP_C_3(1GCK)
AAT_THET8
[Raw transfer]



PLP_B_4(1J32)
?
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



PLP_E_5(1GCK)
AAT_THET8
[Raw transfer]



PLP_B_6(1B5P)
AAT_THET8
[Raw transfer]



PLP_A_5(1B5P)
AAT_THET8
[Raw transfer]



PLP_B_4(1J32)
?
[Raw transfer]



PLP_B_6(5BJ4)
AAT_THET8
[Raw transfer]



PLP_A_3(1DJU)
?
[Raw transfer]



PLP_B_6(1B5O)
AAT_THET8
[Raw transfer]



PLP_A_5(5BJ4)
AAT_THET8
[Raw transfer]
1 PsiBlast_PDB 94.4143%-102 - C1 -1J32 - ? -
21 PsiBlast_CBE 93.3843%-104 - C1 -1J32 5.3 ?
56 HHSearch 92.9544%-103 - C1 -1J32 5.3 ?
43 PsiBlast_CBE 89.2339%-108 - C1 -1O4S 4.5 AAT_THEMA
72 HHSearch 88.4540%-108 - C1 -1O4S 4.5 AAT_THEMA
11 PsiBlast_PDB 85.6639%-105 - C1 -1O4S 4.8 AAT_THEMA
8 PsiBlast_PDB 82.0538% -66 - C1 -1GC4 - AAT_THET8 -
5 PsiBlast_PDB 80.8938% -60 - C1 -1B5P 4.8 AAT_THET8
31 PsiBlast_CBE 80.8238% -66 - C1 -1GC4 - AAT_THET8 -
25 PsiBlast_CBE 80.3138% -61 - C1 -1B5O 5.3 AAT_THET8
29 PsiBlast_CBE 80.2838% -67 - C1 -1GC4 - AAT_THET8 -
3 PsiBlast_PDB 80.0038% -61 - C1 -1B5O 4.9 AAT_THET8
30 PsiBlast_CBE 79.7838% -67 - C1 -1GC4 - AAT_THET8 -
34 PsiBlast_CBE 79.2138% -64 - C1 -1GC3 - AAT_THET8 -
36 PsiBlast_CBE 79.1338% -63 - C1 -1GC3 - AAT_THET8 -
27 PsiBlast_CBE 78.7738% -60 - C1 -1B5P 4.8 AAT_THET8
6 PsiBlast_PDB 78.0238% -60 - C1 -1BJW - AAT_THET8 -
64 HHSearch 77.9539% -64 * C1 *1B5P 4.8 AAT_THET8
35 PsiBlast_CBE 77.8038% -66 - C1 -1GC3 - AAT_THET8 -
61 HHSearch 77.7039% -65 - C1 -1BJW - AAT_THET8 -
26 PsiBlast_CBE 77.7038% -59 - C1 -1GCK 6.5 AAT_THET8
4 PsiBlast_PDB 76.6738% -62 - C1 -1GCK 5.5 AAT_THET8
13 PsiBlast_PDB 75.7635% -40 - C1 -1GDE 4.1 ?
62 HHSearch 74.7035% -38 - C1 -1GDE 4.1 ?
14 PsiBlast_PDB 73.8935% -39 - C1 -1GD9 3.7 ?
28 PsiBlast_CBE 73.0938% -61 - C1 -5BJ4 5.1 AAT_THET8
44 PsiBlast_CBE 73.0535% -39 - C1 -1GDE 4.2 ?
9 PsiBlast_PDB 72.6138% -62 - C1 -5BJ4 5.1 AAT_THET8
45 PsiBlast_CBE 71.6035% -39 - C1 -1GD9 3.8 ?
12 PsiBlast_PDB 66.6536% -41 - C1 -1DJU 3.6 ?