@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1412: (2018-01-11 )
MSDFIVEKLSKSVGDKTVFRDISFIIHDLDRIGLIGVNGTGKTTLLDVLSGVSGFDGDVSPFSAKNDYQIGYLTQDPDFDDRKTVLDTVLSSELKEIQLIREYELIMLDYSEDKQARLERVMAEMDSLQAWEIESQVKTVLSKLGIQDLSTPIGELSGGLRRRVQLAQVLLGNHDLLLLDEPTNHLDIAIIEWLTLFLKNSKKTVLFITHDRYFLDALSTRIFELDRAGLTEYQGNYQDYVRLKAEQDERDAALLHKKEQLYKQELAWMRRQPQARATKQQARINRFHDLKKKVSGSSAETDLTMNFETSRIGKKVIEFQAVSFAYENKPILQDFNLLVQAKDRIGIVGDNGVGKSTLLNLIAGSLEPTKGQVVIGETVRIAYFSQQIEGLDESKRVINYLQEVAEEVKTSGGSTTSIAELLEQFLFPRSTHGTLIEKLSGGEKKRLYLLKLLLEKPNVLLLDEPTNDLDIATLTVLENFLQGFAGPVLTVSHDRYFLDKVATKILAFEDGKIRPFFGHYTDYLDEKAFETDMANQVQKVEKEKVVKVREDKKRMTYQEKQEWASIEGDIETLEKRIAAIEEEMQANGSDFGKLATLQKELDEKNEALLEKYERYEYLSEFDS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ADP_A_5(3OZX)
?
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ADP_B_3(3J15)
?
[Raw transfer]
1 PsiBlast_PDB 80.2635% 23 - C1 -3J5S - ETTA_ECOLI -
21 HHSearch 75.7135% 49 - C1 -3J5S - ETTA_ECOLI -
36 HHSearch 75.4828% -18 - C1 -2IX8 - -
2 PsiBlast_PDB 73.5435% 45 - C1 -4FIN - ETTA_ECOLI -
28 HHSearch 67.6928% 23 - C1 -2IW3 - EF3A_YEAST -
7 PsiBlast_PDB 58.8225% 26 - C1 -3J15 3.8 ?
8 PsiBlast_PDB 58.5025% 26 - C1 -5LW7 - ? -
42 HHSearch 56.7323% 10 - C1 -1YQT - ? -
5 PsiBlast_PDB 56.5527% -18 - C1 -2IX8 - -
4 PsiBlast_PDB 56.4027% -13 - C1 -2IX3 - EF3A_YEAST -
3 PsiBlast_PDB 55.8127% -9 - C1 -2IWH - EF3A_YEAST -
6 PsiBlast_PDB 54.9827% -8 - C1 -2IW3 - EF3A_YEAST -
50 Fugue 54.2118% 61 - C1 -3J16 - RLI1_YEAST -
44 HHSearch 53.9925% -27 * C1 *3RLF - MALK_ECOLI -
47 HHSearch 52.3823% -37 - C1 -4YER - ? -
45 HHSearch 51.4525% -25 - C1 -2AWN - MALK_ECOLI -
9 PsiBlast_PDB 51.3523% 20 - C1 -3OZX 6.4 ?
16 PsiBlast_PDB 50.8426% -16 - C1 -4QC2 - ? -
13 PsiBlast_PDB 50.1928% -27 - C1 -5X40 5.9 CBIO_RHOCB
37 HHSearch 46.8320% 14 - C1 -4CRM - RLI1_YEAST -