@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1414: (2018-01-11 )
MSIRVIIAGFKGKMGQAACQMVLTDPDLDLVAVLDPFESESEWQGIPVFKDKADLAGFEADVWVDFTTPAVAYENTRFALENGFAPVVGTTGFTSEEIAELKEFSRAQDLGGLIAPNFALGAVLLMQFATQAAKYFPNVEIIELHHDKKKDAPSGTAIKTAELMAEVRESIQQGAADEEELIAGARGADFDGMRIHSVRLPGLVAHQEVIFGNQGEGLTLRHDSYDRISFMTGVNLGIKEVVKRHELVYGLEHLL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_I_9(1P9L)
DAPB_MYCTU
[Raw transfer]



NAD_E_5(1P9L)
DAPB_MYCTU
[Raw transfer]



NDP_E_5(1C3V)
DAPB_MYCTU
[Raw transfer]



NAD_I_9(1P9L)
DAPB_MYCTU
[Raw transfer]



NDP_G_7(1C3V)
DAPB_MYCTU
[Raw transfer]



NDP_G_7(1C3V)
DAPB_MYCTU
[Raw transfer]



NAP_A_3(5EES)
DAPB_CORGL
[Raw transfer]



NAP_A_3(5EES)
DAPB_CORGL
[Raw transfer]



A3D_E_5(1DRV)
DAPB_ECOLI
[Raw transfer]



PGE_A_4(4YWJ)
DAPB_PSEAE
[Raw transfer]



PGE_B_8(4YWJ)
DAPB_PSEAE
[Raw transfer]
8 PsiBlast_PDB 79.7344% -89 - C1 -5EES 10.0 DAPB_CORGL
72 HHSearch 79.2244% -83 - C1 -5EES 10.0 DAPB_CORGL
30 PsiBlast_CBE 78.8547% -85 - C1 -1YL7 - DAPB_MYCTU -
7 PsiBlast_PDB 78.2944% -90 - C1 -5EER - DAPB_CORGL -
25 PsiBlast_CBE 78.2747% -84 - C1 -1YL7 - DAPB_MYCTU -
6 PsiBlast_PDB 78.2647% -89 - C1 -1YL7 - DAPB_MYCTU -
3 PsiBlast_PDB 78.0446% -86 - C1 -1P9L 10.2 DAPB_MYCTU
27 PsiBlast_CBE 78.0347% -87 - C1 -1YL7 - DAPB_MYCTU -
22 PsiBlast_CBE 78.0246% -88 - C1 -1C3V 9.7 DAPB_MYCTU
28 PsiBlast_CBE 77.9547% -87 - C1 -1YL7 - DAPB_MYCTU -
21 PsiBlast_CBE 77.4446% -88 - C1 -1P9L 11.2 DAPB_MYCTU
5 PsiBlast_PDB 77.3047% -84 - C1 -1YL6 - DAPB_MYCTU -
73 HHSearch 77.2744% -86 - C1 -5EER - DAPB_CORGL -
2 PsiBlast_PDB 77.2246% -89 - C1 -1C3V 10.7 DAPB_MYCTU
29 PsiBlast_CBE 76.9247% -87 - C1 -1YL7 - DAPB_MYCTU -
26 PsiBlast_CBE 76.8447% -81 - C1 -1YL7 - DAPB_MYCTU -
4 PsiBlast_PDB 76.8347% -80 - C1 -1YL5 - DAPB_MYCTU -
24 PsiBlast_CBE 76.6947% -86 - C1 -1YL7 - DAPB_MYCTU -
77 HHSearch 75.8847% -83 - C1 -1C3V 9.4 DAPB_MYCTU
78 HHSearch 75.7847% -82 - C1 -1P9L 9.3 DAPB_MYCTU
32 PsiBlast_CBE 58.1331% -12 - C1 -4YWJ 1.7 DAPB_PSEAE
10 PsiBlast_PDB 57.4031% -15 - C1 -4YWJ 1.6 DAPB_PSEAE