@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1437: (2018-01-12 )
MVELNLKNIYKKYPNSEHYSVEDFNLNIKDKEFIVFVGPSGCGKSTTLRMIAGLEDITEGTASIDGVVVNDVAPKDRDIAMVFQNYALYPHMTVYDNMAFGLKLRKYSKEDINKRVQEAAEILGLKEFLERKPADLSGGQRQRVAMGRAIVRDAKVFLMDEPLSNLDAKLRVSMRAEIAKIHRRIGATTIYVTHDQTEAMTLADRIVIMSATKNPAGTGTIGRVEQIGTPQEVYKNPVNKFVAGFIGSPAMNFINVKLVGSEIVSDGFRLKVPEGALKVLREKGYEGKELIFGIRPEDVNAEPAFLETFPDCVVKATISVSELLGSESHLYCQVGKDEFVAKVDARDYLQTGATVELGFDLNKAHFFDVETEKTIY

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_J_5(4YMU)
?
[Raw transfer]



ATP_A_6(4YMV)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



ATP_A_7(4YMU)
?
[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ATP_J_5(4YMV)
?
[Raw transfer]



AGS_B_6(3C4J)
?
[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ADP_B_6(2Q0H)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



ADP_A_5(2OLJ)
?
[Raw transfer]



ADP_B_6(2OLJ)
?
[Raw transfer]



AT4_A_5(2OLK)
?
[Raw transfer]



AT4_D_8(2OLK)
?
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]
116 HHSearch 90.2254% -76 - C2 -4TQU - ? -
3 PsiBlast_PDB 88.7750% -75 - C2 -4XIG - ? -
4 PsiBlast_PDB 88.7550% -75 - C2 -4XTC - ? -
1 PsiBlast_PDB 87.6250% -78 - C2 -4TQU - ? -
6 PsiBlast_PDB 85.0447%-104 - C2 -1V43 - ? -
113 HHSearch 84.4848% -81 - C2 -3RLF - MALK_ECOLI -
16 PsiBlast_PDB 84.3146% -88 - C2 -3PUV - MALK_ECOLI -
129 HHSearch 83.9049% -95 - C2 -1V43 - ? -
22 PsiBlast_CBE 83.7746% -84 - C2 -4KI0 - MALK_ECOLI -
21 PsiBlast_CBE 83.5746% -87 - C2 -4KI0 - MALK_ECOLI -
19 PsiBlast_PDB 83.4646% -88 - C2 -3RLF - MALK_ECOLI -
13 PsiBlast_PDB 83.4646% -85 - C2 -3PUY - MALK_ECOLI -
18 PsiBlast_PDB 82.9446% -87 - C2 -3PUX - MALK_ECOLI -
7 PsiBlast_PDB 82.4347%-100 - C2 -1VCI 4.0 ?
17 PsiBlast_PDB 82.2746% -84 - C2 -3PUW - MALK_ECOLI -
24 PsiBlast_CBE 82.2646% -91 - C2 -3PUZ - MALK_ECOLI -
115 HHSearch 82.1854% - - C2 -4TQV - ? -
23 PsiBlast_CBE 82.0746% -90 - C2 -3RLF - MALK_ECOLI -
34 PsiBlast_CBE 81.8045% -82 - C2 -2R6G - MALK_ECOLI (first) -
14 PsiBlast_PDB 81.5146% -88 - C2 -3PUZ - MALK_ECOLI -
118 HHSearch 79.5655% 9 - C2 -2D62 3.0 ?
5 PsiBlast_PDB 78.0751% 7 - C2 -2D62 3.0 ?
71 PsiBlast_CBE 47.7833% -48 - C2 -2OLK 3.7 ?
73 PsiBlast_CBE 46.3533% -40 - C2 -2OLJ 3.9 ?
63 PsiBlast_CBE 45.9433% -40 - C2 -2Q0H 3.3 ?
61 PsiBlast_CBE 45.8733% -37 - C2 -3C4J 4.7 ?
60 PsiBlast_CBE 45.7633% -39 - C2 -3C4J 3.2 ?
58 PsiBlast_CBE 45.3033% -44 - C2 -3C41 3.6 ?
70 PsiBlast_CBE 45.2533% -42 - C2 -2OLK 3.7 ?
69 PsiBlast_CBE 45.1533% -48 - C2 -2OLK 4.2 ?
68 PsiBlast_CBE 45.1033% -39 - C2 -2OLK 4.0 ?
59 PsiBlast_CBE 44.9733% -42 - C2 -3C41 5.1 ?
72 PsiBlast_CBE 44.6033% -32 - C2 -2OLJ 3.5 ?
62 PsiBlast_CBE 44.3333% -50 - C2 -2Q0H 3.6 ?
78 PsiBlast_CBE 43.6631% -14 - C2 -4YMV 7.1 ?
79 PsiBlast_CBE 43.4231% -13 - C2 -4YMV 4.5 ?
80 PsiBlast_CBE 43.1031% -17 - C2 -4YMU 5.6 ?
81 PsiBlast_CBE 42.7131% -17 - C2 -4YMU 5.8 ?
76 PsiBlast_CBE 33.0036% 28 - C2 -3TIF 3.8 Y796_METJA