@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1440: (2018-01-12 )
MKFNELNLSADLLAEIEKAGFVEASPIQEQTIPLALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRSKGVKVRSVYGGSSIEKQIKALKSGAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEMLNMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAKELTTELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDLDQNKRLRVLRDFKNGNLDVLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKSGQSITFVAPNEMGYLQIIENLTKKRMKGLKPASVEESFQSKKQVALKKIERDFADETIRANFEKFGKDARKLAAEFTPEELAMYILSLTVQDPDSLPEVEIAREKPLPFKPSGNGFGGKAKGGRGGRRGDDRRERDRRGNGRRDEFKKGSRGNDRFDKEKRYRKDNKKPRNTLSEKQTGFVIRNKGDK

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_A_2(5E7M)
DDX3X_HUMAN
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_3(4D25)
?
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




8OD_B_7(3NBF)
?
[Raw transfer]




ANP_A_3(3G0H)
DD19B_HUMAN
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(3I5Y)
MS116_YEAST
[Raw transfer]




ANP_A_7(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_B_12(3FHT)
DD19B_HUMAN
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_3(3I5X)
MS116_YEAST
[Raw transfer]




ANP_A_7(2J0S)
IF4A3_HUMAN
[Raw transfer]




ADP_A_3(4D26)
?
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




ANP_A_3(3SQW)
MS116_YEAST
[Raw transfer]




M2A_A_3(5ELX)
DBP5_YEAST
[Raw transfer]




ADP_A_5(4TYN)
MS116_YEAST
[Raw transfer]




ADP_A_6(4TYW)
MS116_YEAST
[Raw transfer]




ADP_A_5(4TYN)
MS116_YEAST
[Raw transfer]




ANP_A_3(3SQX)
MS116_YEAST
[Raw transfer]




ADP_A_3(3PEY)
DBP5_YEAST
[Raw transfer]




ADP_A_3(3PEW)
DBP5_YEAST
[Raw transfer]




AMP_A_2(5GJU)
?
[Raw transfer]




8OP_C_10(3NBF)
?
[Raw transfer]




ADP_A_3(3I61)
MS116_YEAST
[Raw transfer]




ADP_A_3(3I62)
MS116_YEAST
[Raw transfer]




ADP_B_5(4PX9)
DDX3X_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




AMP_A_2(2I4I)
DDX3X_HUMAN
[Raw transfer]




ADP_C_6(4PX9)
DDX3X_HUMAN
[Raw transfer]




ADP_A_4(4PX9)
DDX3X_HUMAN
[Raw transfer]




8OP_B_6(3MWK)
?
[Raw transfer]




CDP_A_4(4TYY)
MS116_YEAST
[Raw transfer]




AMP_A_8(2GXS)
?
[Raw transfer]




AMP_A_2(2GXQ)
?
[Raw transfer]




ADP_A_2(4PXA)
DDX3X_HUMAN
[Raw transfer]




GDP_A_3(4TZ0)
MS116_YEAST
[Raw transfer]




ADP_A_3(3DKP)
DDX52_HUMAN
[Raw transfer]




8OD_A_5(3NBF)
?
[Raw transfer]




ADP_B_4(3FMO)
DD19B_HUMAN
[Raw transfer]




8OX_B_6(3MWL)
?
[Raw transfer]




AMP_A_2(5E7J)
DDX3X_HUMAN
[Raw transfer]




AMP_A_3(4KBF)
?
[Raw transfer]




UDP_A_4(4TZ6)
MS116_YEAST
[Raw transfer]




AMP_B_9(2GXS)
?
[Raw transfer]




ADP_A_3(3EWS)
DD19B_HUMAN
[Raw transfer]




AMP_B_6(2VSO)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSX)
IF4A_YEAST
[Raw transfer]




AMP_A_5(2VSO)
IF4A_YEAST
[Raw transfer]




LMR_A_2(5GVR)
DDX41_HUMAN
[Raw transfer]




1PE_A_4(4BRW)
DHH1_YEAST
[Raw transfer]




EOH_A_4(2PL3)
DDX10_HUMAN
[Raw transfer]




IPA_D_4(1XTI)
DX39B_HUMAN
[Raw transfer]




137 HHSearch 86.8158% -95 - C1 -5IVL - ? -
1 PsiBlast_PDB 85.7162% -93 - C1 -5IVL - ? -
10 PsiBlast_PDB 75.6338%-127 - C1 -1S2M - DHH1_YEAST -
3 PsiBlast_PDB 74.0641% -77 - C1 -2J0Q - IF4A3_HUMAN -
23 PsiBlast_CBE 73.9341% -77 - C1 -2XB2 - IF4A3_HUMAN -
12 PsiBlast_PDB 73.9037%-127 - C1 -4BRW 1.9 DHH1_YEAST
6 PsiBlast_PDB 73.8141% -78 - C1 -2HYI - IF4A3_HUMAN -
7 PsiBlast_PDB 73.6141% -81 - C1 -3EX7 - IF4A3_HUMAN -
24 PsiBlast_CBE 73.3641% -75 - C1 -3EX7 - IF4A3_HUMAN -
11 PsiBlast_PDB 73.3037%-124 - C1 -4BRU - DHH1_YEAST -
25 PsiBlast_CBE 73.2241% -75 - C1 -2HYI - IF4A3_HUMAN -
4 PsiBlast_PDB 73.1441% -78 - C1 -2J0S 9.1 IF4A3_HUMAN
5 PsiBlast_PDB 73.0941% -76 - C1 -2XB2 - IF4A3_HUMAN -
22 PsiBlast_CBE 72.9741% -77 - C1 -2J0Q - IF4A3_HUMAN -
149 HHSearch 72.7139%-123 - C1 -1S2M - DHH1_YEAST -
33 PsiBlast_CBE 70.0339% -83 - C1 -2VSX - IF4A_YEAST -
34 PsiBlast_CBE 70.0039% -83 - C1 -2VSX 4.9 IF4A_YEAST
20 PsiBlast_PDB 69.9839% -85 - C1 -2VSO 4.9 IF4A_YEAST
150 HHSearch 69.7640% -75 - C1 -2J0U - IF4A3_HUMAN -
35 PsiBlast_CBE 69.7339% -85 - C1 -2VSO 5.1 IF4A_YEAST
13 PsiBlast_PDB 68.8443% -11 - C1 -4KBF 5.0 ?
39 PsiBlast_CBE 67.1539% -11 - C1 -4PXA 4.2 DDX3X_HUMAN
40 PsiBlast_CBE 66.9836% -5 - C1 -4D26 5.1 ?
41 PsiBlast_CBE 66.6836% 1 - C1 -4D25 8.0 ?
144 HHSearch 66.1238% -4 - C1 -4D26 5.1 ?
145 HHSearch 65.5938% 2 - C1 -4D25 8.0 ?
43 PsiBlast_CBE 64.1437% -33 - C1 -1XTI 3.8 DX39B_HUMAN
38 PsiBlast_CBE 63.5639% 5 - C1 -2I4I 5.7 DDX3X_HUMAN
154 HHSearch 63.1639% 14 - C1 -2I4I 5.7 DDX3X_HUMAN
37 PsiBlast_CBE 62.8539% 17 - C1 -5E7J 5.4 DDX3X_HUMAN
36 PsiBlast_CBE 62.5739% 22 - C1 -5E7M 4.7 DDX3X_HUMAN
48 PsiBlast_CBE 61.2438% 25 - C1 -3PEY 7.9 DBP5_YEAST
46 PsiBlast_CBE 61.2038% 27 - C1 -3PEW 8.0 DBP5_YEAST
157 HHSearch 58.5935% 35 - C1 -3G0H 7.9 DD19B_HUMAN
60 PsiBlast_CBE 57.2633% 35 - C1 -3FHT 9.2 DD19B_HUMAN
61 PsiBlast_CBE 57.1833% 33 * C1 *3FHT 8.5 DD19B_HUMAN
58 PsiBlast_CBE 56.3533% 34 - C1 -3G0H 7.9 DD19B_HUMAN
59 PsiBlast_CBE 55.7633% 41 - C1 -3EWS 6.6 DD19B_HUMAN
140 HHSearch 52.7431% 24 - C1 -3I5X 9.8 MS116_YEAST
138 HHSearch 52.7231% 25 - C1 -3SQW 9.5 MS116_YEAST
143 HHSearch 52.2131% 24 - C1 -4TYN 6.4 MS116_YEAST
65 PsiBlast_CBE 51.5646% -40 - C1 -2GXQ 6.0 ?
64 PsiBlast_CBE 51.0746% -34 - C1 -2GXS 5.8 ?
54 PsiBlast_CBE 49.7152% -50 - C1 -5GJU 4.6 ?
86 PsiBlast_CBE 49.4531% 53 - C1 -3SQX 9.6 MS116_YEAST
78 PsiBlast_CBE 49.4431% 52 - C1 -3I61 7.8 MS116_YEAST
77 PsiBlast_CBE 49.3431% 52 - C1 -3I62 7.5 MS116_YEAST
76 PsiBlast_CBE 49.3231% 52 - C1 -3SQW 9.3 MS116_YEAST
84 PsiBlast_CBE 49.1431% 52 - C1 -4TYN 6.3 MS116_YEAST
80 PsiBlast_CBE 48.4631% 51 - C1 -3I5X 9.7 MS116_YEAST
81 PsiBlast_CBE 48.4131% 50 - C1 -4TZ6 4.2 MS116_YEAST
85 PsiBlast_CBE 48.1331% 52 - C1 -4TYW 7.0 MS116_YEAST
63 PsiBlast_CBE 47.9846% -30 - C1 -2GXS 4.8 ?
79 PsiBlast_CBE 47.7431% 55 - C1 -3I5Y 9.0 MS116_YEAST
97 PsiBlast_CBE 47.3637% -20 - C1 -4PX9 5.6 DDX3X_HUMAN
83 PsiBlast_CBE 47.2431% 52 - C1 -4TYY 4.6 MS116_YEAST
99 PsiBlast_CBE 46.8837% -20 - C1 -4PX9 5.6 DDX3X_HUMAN
98 PsiBlast_CBE 46.7637% -19 - C1 -4PX9 5.0 DDX3X_HUMAN
103 PsiBlast_CBE 45.2137% -36 - C1 -5GVR 2.0 DDX41_HUMAN
102 PsiBlast_CBE 41.8738% -6 - C1 -2PL3 3.4 DDX10_HUMAN
115 PsiBlast_CBE 36.0835% 9 - C1 -3FMO 6.9 DD19B_HUMAN
121 PsiBlast_CBE 34.5432% -20 - C1 -3DKP 6.1 DDX52_HUMAN