@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1456: (2018-01-12 )
MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRAATYMALKNQLGVEEVEALLALLDQHPISFGRSETGDQLVFVGDVDITHPIRENEVTNHVSAIAAIPEVREKLVSLQQEIAQQGGIVMDGRDIGTVVLPQAELKIFLVASVDERAERRYKENIAKGIETDLETLKKEIAARDYKDSHRETSPLKQAEDAVYLDTTGLNIQEVVEKIKAEAEKRM

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

C5P_H_8(2H92)
KCY_STAAW
[Raw transfer]




CDP_D_4(2CMK)
KCY_ECOLI
[Raw transfer]




C_H_8(1KDO)
KCY_ECOLI
[Raw transfer]




C_E_5(1KDP)
KCY_ECOLI
[Raw transfer]




CAR_F_6(1KDR)
KCY_ECOLI
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




C5P_G_7(2H92)
KCY_STAAW
[Raw transfer]




CAR_G_7(1KDR)
KCY_ECOLI
[Raw transfer]




C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]




C5P_I_9(2H92)
KCY_STAAW
[Raw transfer]




C_F_6(1KDP)
KCY_ECOLI
[Raw transfer]




CDP_A_2(3AKD)
KCY_THET8
[Raw transfer]




DOC_F_6(1KDT)
KCY_ECOLI
[Raw transfer]




DC_C_3(2FEO)
KCY_ECOLI
[Raw transfer]




DOC_G_7(1KDT)
KCY_ECOLI
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C5P_B_7(4DIE)
?
[Raw transfer]




C5P_C_9(4DIE)
?
[Raw transfer]




C5P_A_5(4DIE)
?
[Raw transfer]




C5P_D_11(4DIE)
?
[Raw transfer]




C_I_9(1KDO)
KCY_ECOLI
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




DPO_A_2(3R20)
?
[Raw transfer]




ADP_A_3(3AKC)
KCY_THET8
[Raw transfer]




GD_A_4(3AKC)
KCY_THET8
[Raw transfer]




C5P_A_2(3AKE)
KCY_THET8
[Raw transfer]




1 PsiBlast_PDB 80.10100%-102 - C3 -1Q3T - KCY_STRPN -
126 Fugue 61.3738%-116 - C3 -1CKE - KCY_ECOLI -
109 HHSearch 60.6751% -86 - C3 -2H92 8.9 KCY_STAAW
28 PsiBlast_CBE 60.6738%-108 - C3 -1KDP 5.9 KCY_ECOLI
7 PsiBlast_PDB 60.4638%-112 - C3 -2CMK 5.5 KCY_ECOLI
2 PsiBlast_PDB 59.8751% -80 - C3 -2H92 7.9 KCY_STAAW
9 PsiBlast_PDB 59.7938% -99 - C3 -1KDP 7.7 KCY_ECOLI
6 PsiBlast_PDB 59.6538%-119 - C3 -1CKE - KCY_ECOLI -
26 PsiBlast_CBE 59.6438%-107 - C3 -1KDT 5.1 KCY_ECOLI
21 PsiBlast_CBE 59.6051% -84 - C3 -2H92 8.9 KCY_STAAW
11 PsiBlast_PDB 59.3938%-104 - C3 -1KDT 6.0 KCY_ECOLI
22 PsiBlast_CBE 59.2851% -82 - C3 -2H92 8.0 KCY_STAAW
27 PsiBlast_CBE 59.1238% -99 - C3 -1KDR 5.1 KCY_ECOLI
13 PsiBlast_PDB 58.6438%-121 - C3 -2FEM - KCY_ECOLI -
8 PsiBlast_PDB 58.6338% -98 - C3 -1KDO 8.3 KCY_ECOLI
29 PsiBlast_CBE 58.5738%-106 - C3 -1KDO 8.3 KCY_ECOLI
10 PsiBlast_PDB 58.5538%-101 - C3 -1KDR 5.4 KCY_ECOLI
12 PsiBlast_PDB 58.4338%-126 - C3 -4E22 - KCY_YERPY -
106 HHSearch 56.7839% -58 * C3 *3R20 3.0 ?
17 PsiBlast_PDB 56.7734%-109 - C3 -3AKE - KCY_THET8 -
14 PsiBlast_PDB 56.5638%-101 - C3 -2FEO 4.3 KCY_ECOLI
108 HHSearch 56.4242% -58 - C3 -4DIE 5.5 ?
4 PsiBlast_PDB 56.3543% -73 - C3 -4DIE 5.2 ?
24 PsiBlast_CBE 56.3243% -63 - C3 -4DIE 5.5 ?
23 PsiBlast_CBE 56.1643% -76 - C3 -4DIE 5.5 ?
5 PsiBlast_PDB 56.0640% -57 - C3 -3R20 3.9 ?
15 PsiBlast_PDB 55.6034% -94 - C3 -3AKC 7.3 KCY_THET8
25 PsiBlast_CBE 55.0443% -76 - C3 -4DIE 6.0 ?
123 HHSearch 26.9845% -48 - C3 -1KDO 4.8 KCY_ECOLI
111 HHSearch 20.6046%-143 - C3 -3AKC 4.7 KCY_THET8
110 HHSearch 18.5246%-139 - C3 -3AKE 3.6 KCY_THET8