@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1514: (2018-01-13 )
MKLTIHEIAQVVGAKNDISIFEDTQLEKAEFDSRLIGTGDLFVPLKGARDGHDFIETAFENGAAVTLSEKEVSNHPYILVDDVLTAFQSLASYYLEKTTVDVFAVTGSNGKTTTKDMLAHLLSTRYKTYKTQGNYNNEIGLPYTVLHMPEGTEKLVLEMGQDHLGDIHLLSELARPKTAIVTLVGEAHLAFFKDRSEIAKGKMQIADGMASGSLLLAPADPIVEDYLPIDKKVVRFGQGAELEITDLVERKDSLTFKANFLEQALDLPVTGKYNATNAMIASYVALQEGVSEEQIRLAFQHLELTRNRTEWKKAANGADILSDVYNANPTAMKLILETFSAIPANEGGKKIAVLADMKELGDQSVQLHNQMILSLSPDVLDIVIFYGEDIAQLAQLASQMFPIGHVYYFKKTEDQDQFEDLVKQVKESLGAHDQILLKGSNSMNLAKLVESLENEDK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4QDI)
?
[Raw transfer]




ANP_A_2(4ZIY)
?
[Raw transfer]




API_A_6(4CVK)
?
[Raw transfer]




2GN_A_2(3ZM6)
?
[Raw transfer]




1LG_A_2(2AM1)
?
[Raw transfer]




FGA_A_5(4CVM)
?
[Raw transfer]




2 PsiBlast_PDB 90.23100%-102 - C3 -3ZM6 - ? -
1 PsiBlast_PDB 90.01100%-104 - C3 -3ZM5 - ? -
4 PsiBlast_PDB 88.6297%-101 - C3 -2AM2 - ? -
3 PsiBlast_PDB 88.5097% -99 - C3 -2AM1 - ? -
34 HHSearch 80.2296% -38 - C3 -3ZM6 11.5 ?
35 HHSearch 79.3996% -33 - C3 -2AM1 8.3 ?
32 HHSearch 56.4828% -2 - C3 -4QDI - ? -
37 HHSearch 56.2531% -1 - C3 -4CVM 3.3 ?
33 HHSearch 55.1228% 1 - C3 -1GG4 - -
36 HHSearch 54.5931% 1 - C3 -4CVK 2.4 ?
8 PsiBlast_PDB 52.9428% 15 - C3 -1GG4 - MURF_ECOLI -
5 PsiBlast_PDB 49.5230% 33 - C3 -3ZL8 - ? -
38 HHSearch 48.9929% 25 - C3 -3ZL8 - ? -
6 PsiBlast_PDB 47.9630% 10 - C3 -4QDI 8.6 ?
7 PsiBlast_PDB 47.9030% 8 - C3 -4ZIY 9.0 ?
41 HHSearch 46.5922% 8 - C3 -4BUB - MURE_THEMA -
11 PsiBlast_PDB 39.9433%-169 - C3 -4BUB - MURE_THEMA -
30 PsiBlast_CBE 36.2340%-120 - C3 -1E8C - MURE_ECOLI -
53 HHSearch 35.9020% 4 - C3 -4HV4 - MURC_YERPE -
43 HHSearch 35.5923% 30 - C3 -3LK7 - MURD_STRA5 -