@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1529: (2018-01-14 )
MPQISKEALIEQIKDGIIVSCQALPHEPLYTEAGGVIPLLVKAAEQGGAVGIRANSVRDIKEIKEVTKLPIIGIIKRDYPPQEPFITATMKEVDELAELDIEVIALDCTKRERYDGLEIQEFIRQVKEKYPNQLLMADTSIFEEGLAAVEAGIDFVGTTLSGYTSYSPKVDGPDFELIKKLCDAGVDVIAEGKIHTPEQAKQILEYGVRGIVVGGAITRPKEITERFVASLK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

RFW_C_10(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_A_6(4UTW)
NANE_CLOPE
[Raw transfer]




RFW_D_12(4UTW)
NANE_CLOPE
[Raw transfer]




LRY_B_5(4UTU)
NANE_CLOPE
[Raw transfer]




RFW_B_8(4UTW)
NANE_CLOPE
[Raw transfer]




LRY_A_3(4UTU)
NANE_CLOPE
[Raw transfer]




LRY_B_5(4UTU)
NANE_CLOPE
[Raw transfer]




16G_A_3(3IGS)
NANE2_SALTY
[Raw transfer]




PEG_A_3(3Q58)
NANE_SALTI
[Raw transfer]




PEG_A_4(3Q58)
NANE_SALTI
[Raw transfer]




1 PsiBlast_PDB 87.2873%-117 - C1 -1YXY - NANE_STRP1 -
40 HHSearch 82.8170% -76 - C1 -1YXY - NANE_STRP1 -
27 PsiBlast_CBE 73.4550% -82 - C1 -4UTU 5.0 NANE_CLOPE
21 PsiBlast_CBE 73.1451% -81 - C1 -4UTW 4.0 NANE_CLOPE
24 PsiBlast_CBE 72.8351% -79 - C1 -4UTW 3.6 NANE_CLOPE
4 PsiBlast_PDB 72.8250% -83 - C1 -4UTU 5.0 NANE_CLOPE
23 PsiBlast_CBE 72.7151% -79 - C1 -4UTW 3.8 NANE_CLOPE
2 PsiBlast_PDB 72.6551% -80 - C1 -4UTW 4.0 NANE_CLOPE
3 PsiBlast_PDB 72.5151% -81 - C1 -4UTT - NANE_CLOP1 -
41 HHSearch 69.6447% -80 - C1 -1Y0E - NANE_STAAN -
42 HHSearch 69.0550% -55 - C1 -4UTT - NANE_CLOP1 -
5 PsiBlast_PDB 68.8449% -62 - C1 -1Y0E - NANE_STAAN -
44 HHSearch 68.4847% -39 - C1 -4UTU 4.8 NANE_CLOPE
7 PsiBlast_PDB 65.2435%-114 - C1 -3Q58 2.5 NANE_SALTI
43 HHSearch 61.8736% -87 - C1 -3IGS - NANE2_SALTY -
6 PsiBlast_PDB 60.1235% 23 - C1 -3IGS 2.4 NANE2_SALTY
59 HHSearch 42.6925% -26 - C1 -2ZBT - PDXS_THET8 -
47 HHSearch 40.7020% -11 - C1 -4ADS - PDX1_PLABE -
31 Fugue 40.3517% 43 - C1 -2TPS - THIE_BACSU -
50 HHSearch 40.0520% 0 - C1 -4ADT - PDX1_PLABE -