@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1536: (2018-01-14 )
MSYFRNRDIDIERNSMNRSVQERKCRYSIRKLSVGAVSMIVGAVVFGTSPVLAQEGASEQPLANETQLSGESSTLTDTEKSQPSSETELSGNKQEQERKDKQEEKIPRDYYARDLENVETVIEKEDVETNASNGQRVDLSSELDKLKKLENATVHMEFKPDAKAPAFYNLFSVSSATKKDEYFTMAVYNNTATLEGRGSDGKQFYNNYNDAPLKVKPGQWNSVTFTVEKPTAELPKGRVRLYVNGVLSRTSLRSGNFIKDMPDVTHVQIGATKRANNTVWGSNLQIRNLTVYNRALTPEEVQKRSQLFKRSDLEKKLPEGAALTEKTDIFESGRNGKPNKDGIKSYRIPALLKTDKGTLIAGADERRLHSSDWGDIGMVIRRSEDNGKTWGDRVTITNLRDNPKASDPSIGSPVNIDMVLVQDPETKRIFSIYDMFPEGKGIFGMSSQKEEAYKKIDGKTYQILYREGEKGAYTIRENGTVYTPDGKATDYRVVVDPVKPAYSDKGDLYKGNQLLGNIYFTTNKTSPFRIAKDSYLWMSYSDDDGKTWSAPQDITPMVKADWMKFLGVGPGTGIVLRNGPHKGRILIPVYTTNNVSHLNGSQSSRIIYSDDHGKTWHAGEAVNDNRQVDGQKIHSSTMNNRRAQNTESTVVQLNNGDVKLFMRGLTGDLQVATSKDGGVTWEKDIKRYPQVKDVYVQMSAIHTMHEGKEYIILSNAGGPKRENGMVHLARVEENGELTWLKHNPIQKGEFAYNSLQELGNGEYGILYEHTEKGQNAYTLSFRKFNWDFLSKDLISPTEAKVKRTREMGKGVIGLEFDSEVLVNKAPTLQLANGKTARFMTQYDTKTLLFTVDSEDMGQKVTGLAEGAIESMHNLPVSVAGTKLSNGMNGSEAAVHEVPEYTGPLGTSGEEPAPTVEKPEYTGPLGTSGEEPAPTVEKPEYTGPLGTAGEEAAPTVEKPEFTGGVNGTEPAVHEIAEYKGSDSLVTLTTKEDYTYKAPLAQQALPETGNKESDLLASLGLTAFFLGLFTLGKKREQ

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SIA_A_3(2YA5)
NANA_STREE
[Raw transfer]




SIA_B_4(3H72)
NANA_STRR6
[Raw transfer]




SIA_B_8(2YA5)
NANA_STREE
[Raw transfer]




6UD_A_3(5KKY)
?
[Raw transfer]




DAN_A_3(2YA6)
NANA_STREE
[Raw transfer]




SIA_A_3(3H72)
NANA_STRR6
[Raw transfer]




DAN_B_8(2YA6)
NANA_STREE
[Raw transfer]




6UD_B_6(5KKY)
?
[Raw transfer]




DAN_A_3(3H73)
NANA_STRR6
[Raw transfer]




DAN_A_3(2VVZ)
NANA_STREE
[Raw transfer]




DAN_B_4(3H73)
NANA_STRR6
[Raw transfer]




SIA_A_2(2BF6)
?
[Raw transfer]




SIA_A_2(2BF6)
?
[Raw transfer]




DAN_B_5(2VVZ)
NANA_STREE
[Raw transfer]




DAN_A_3(2VK6)
?
[Raw transfer]




FSI_A_4(2VK7)
?
[Raw transfer]




FSI_B_6(2VK7)
?
[Raw transfer]




G39_A_3(2YA8)
NANA_STREE
[Raw transfer]




G39_B_8(2YA8)
NANA_STREE
[Raw transfer]




EDO_A_6(2YA4)
NANA_STREE
[Raw transfer]




EDO_B_16(2YA4)
NANA_STREE
[Raw transfer]




NHE_A_3(5TSP)
?
[Raw transfer]




NHE_B_5(5TSP)
?
[Raw transfer]




DMS_A_3(4XJW)
NANB_STRPN
[Raw transfer]




23 PsiBlast_CBE 93.59100% -32 - C5 -3H72 5.9 NANA_STRR6
3 PsiBlast_PDB 93.06100% -31 - C5 -3H73 5.7 NANA_STRR6
2 PsiBlast_PDB 92.87100% -29 - C5 -3H72 5.9 NANA_STRR6
22 PsiBlast_CBE 92.85100% -30 - C5 -3H73 5.8 NANA_STRR6
11 PsiBlast_PDB 92.6497% -31 - C5 -3H71 - NANA_STRR6 -
4 PsiBlast_PDB 92.4698% -30 - C5 -5KKY 6.1 ?
9 PsiBlast_PDB 92.4098% -33 - C5 -2YA7 - NANA_STREE -
5 PsiBlast_PDB 92.19100% -31 - C5 -2W20 - NANA_STRR6 -
24 PsiBlast_CBE 92.1698% -29 - C5 -5KKY 5.7 ?
29 PsiBlast_CBE 91.9998% -31 - C5 -2YA7 - NANA_STREE -
25 PsiBlast_CBE 91.74100% -31 - C5 -2W20 - NANA_STRR6 -
21 PsiBlast_CBE 91.73100% -31 - C5 -2VVZ 4.8 NANA_STREE
1 PsiBlast_PDB 91.73100% -31 - C5 -2VVZ 5.1 NANA_STREE
8 PsiBlast_PDB 91.7198% -30 - C5 -2YA6 5.8 NANA_STREE
7 PsiBlast_PDB 91.6698% -29 - C5 -2YA5 6.2 NANA_STREE
31 PsiBlast_CBE 91.6598% -31 - C5 -2YA5 6.1 NANA_STREE
28 PsiBlast_CBE 91.5798% -29 - C5 -2YA7 - NANA_STREE -
27 PsiBlast_CBE 91.5798% -31 - C5 -2YA7 - NANA_STREE -
10 PsiBlast_PDB 91.5498% -29 - C5 -2YA8 4.7 NANA_STREE
6 PsiBlast_PDB 91.4198% -28 - C5 -2YA4 3.8 NANA_STREE
26 PsiBlast_CBE 91.1398% -29 - C5 -2YA8 5.0 NANA_STREE
32 PsiBlast_CBE 90.9998% -30 - C5 -2YA4 3.8 NANA_STREE
30 PsiBlast_CBE 90.3898% -28 - C5 -2YA6 5.9 NANA_STREE
17 PsiBlast_PDB 56.9341% 80 - C5 -2VK6 6.0 ?
34 PsiBlast_CBE 56.9141% 78 - C5 -2VK7 4.3 ?
91 HHSearch 56.5941% 50 - C5 -2BF6 4.6 ?
19 PsiBlast_PDB 56.5141% 77 - C5 -2BF6 4.5 ?
18 PsiBlast_PDB 55.5841% 78 - C5 -2VK7 4.3 ?
15 PsiBlast_PDB 55.5241% 78 - C5 -5TSP 2.4 ?
33 PsiBlast_CBE 54.0641% 79 - C5 -5TSP 2.3 ?