@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1542: (2018-01-14 )
MAFIEKGQEIDMEVIKAETQLSAEALRLKESRDRELADIISGEDDRILLVIGPCSSDNEEAVLEYARRLSALQKKVADKIFMVMRVYTAKPRTNGDGYKGLVHQPDTSKAPSLINGLQAVRQLHYRVITETGLTTADEMLYPSNLILVDDLVSYHAVGARSVEDQEHRFVASGIDAPVGMKNPTSGNLGVMFNAIYAAQNKQTFLYHGQEVETSGNPLAHVILRGAVNEYGNYMPNYYYENLLQAIERYETMGLENPFILIDTNHDNSGKQYMEQIRIVRQTLQNRDWNEKIKKTVRGFMIESYLADGRQNQPEIFGCSITDPCLGWENTEALVEEIYVTLTK

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_B_7(1OFA)
AROG_YEAST
[Raw transfer]




PEP_A_4(1OFA)
AROG_YEAST
[Raw transfer]




PGA_A_3(1OFO)
AROG_YEAST
[Raw transfer]




GOL_B_9(1OFA)
AROG_YEAST
[Raw transfer]




G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]




G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]




E4P_A_8(1RZM)
AROF_THEMA
[Raw transfer]




EDO_D_19(5D04)
?
[Raw transfer]




118 HHSearch 90.0038% -29 - C4 -5DCB - ? -
117 HHSearch 87.9137% -25 - C4 -5D04 2.3 ?
35 PsiBlast_CBE 85.5638% -30 - C4 -5DCE - ? -
134 Fugue 85.5536% -23 - C4 -1QR7 - AROG_ECOLI -
23 PsiBlast_CBE 85.4338% -28 - C4 -5CZS - ? -
33 PsiBlast_CBE 85.3838% -29 - C4 -5DCE - ? -
3 PsiBlast_PDB 85.3038% -29 - C4 -5CZT - ? -
29 PsiBlast_CBE 85.2938% -29 - C4 -5CZT - ? -
34 PsiBlast_CBE 85.1238% -27 - C4 -5DCE - ? -
52 PsiBlast_CBE 85.0438% -25 - C4 -4UC5 - ? -
71 PsiBlast_CBE 85.0238% -27 - C4 -5D05 - ? -
18 PsiBlast_PDB 85.0038% -28 - C4 -5D05 - ? -
21 PsiBlast_CBE 84.9738% -28 - C4 -5CZS - ? -
38 PsiBlast_CBE 84.9438% -28 - C4 -5DCD - ? -
9 PsiBlast_PDB 84.9238% -28 - C4 -4UC5 - ? -
39 PsiBlast_CBE 84.9138% -28 - C4 -5DCB - ? -
36 PsiBlast_CBE 84.9038% -27 - C4 -5DCD - ? -
24 PsiBlast_CBE 84.8638% -28 - C4 -5CZ0 - ? -
72 PsiBlast_CBE 84.8438% -28 - C4 -5D05 - ? -
22 PsiBlast_CBE 84.8238% -30 - C4 -5CZS - ? -
114 HHSearch 83.5234% -11 - C4 -1OF8 3.1 AROG_YEAST
113 PsiBlast_CBE 74.0735% 43 - C4 -1OF8 3.1 AROG_YEAST
109 PsiBlast_CBE 73.6235% 43 - C4 -1OFO 4.0 AROG_YEAST
111 PsiBlast_CBE 73.2635% 40 - C4 -1OFA 5.5 AROG_YEAST
112 PsiBlast_CBE 73.2235% 45 - C4 -1OFA 5.3 AROG_YEAST