@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1543: (2018-01-14 )
MVFTAKSSKINIEEVRALSKLEGQALERKSQRDQELEAIIRGEDQRILLVIGPCSSDNEEAVLEYANRLAVLQEEVADRIFMVMRVYTAKPRTNGDGYKGLIHQPNATEAPSLINGIKAVRHLHYRVITETGMTTADEMLYPENLPLVDDLISYMAVGARSVEDQQHRFVASGAGFSTGFKNPTSGNLNVMFNGIYAAQNKQSFLFLGKEVETTGNPLSHAILRGALNEYGKNIPNYYYDNLIDTIAQYEKMGLENPFIIIDTNHDNSGKQYIEQIRIVRQTLINRAWNEKIKQFVRGFMIESYLEDGRQNEPEVFGKSITDPCLGWDNTEALVREIYKTLGE

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

PEP_A_4(1OFA)
AROG_YEAST
[Raw transfer]



PEP_B_7(1OFA)
AROG_YEAST
[Raw transfer]



PGA_A_3(1OFO)
AROG_YEAST
[Raw transfer]



GOL_B_9(1OFA)
AROG_YEAST
[Raw transfer]



G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]



G3P_B_10(1OF8)
AROG_YEAST
[Raw transfer]



E4P_A_8(1RZM)
AROF_THEMA
[Raw transfer]



EDO_D_19(5D04)
?
[Raw transfer]
120 HHSearch 92.5535% -18 - C5 -1N8F - AROG_ECOLI -
117 HHSearch 91.0635% -20 - C5 -5D04 2.3 ?
134 Fugue 90.9835% -18 - C5 -1QR7 - AROG_ECOLI -
118 HHSearch 90.6435% -22 - C5 -5DCB - ? -
116 HHSearch 89.7935% -17 - C5 -1KFL - AROG_ECOLI -
115 HHSearch 88.3033% -6 - C5 -1OF8 3.1 AROG_YEAST
34 PsiBlast_CBE 88.1139% -19 - C5 -5DCE - ? -
31 PsiBlast_CBE 87.8239% -21 - C5 -5D02 - ? -
49 PsiBlast_CBE 87.5839% -19 - C5 -4UMA - ? -
47 PsiBlast_CBE 87.5339% -15 - C5 -4UMB - ? -
35 PsiBlast_CBE 87.4439% -23 - C5 -5DCE - ? -
9 PsiBlast_PDB 87.3739% -22 - C5 -4UC5 - ? -
45 PsiBlast_CBE 87.3639% -17 - C5 -4UMB - ? -
119 HHSearch 87.3132% -22 - C5 -3TQK - ? -
27 PsiBlast_CBE 87.3039% -22 - C5 -5CZT - ? -
61 PsiBlast_CBE 87.2939% -16 - C5 -4HSO - ? -
33 PsiBlast_CBE 87.2539% -20 - C5 -5DCE - ? -
36 PsiBlast_CBE 87.2439% -18 - C5 -5DCD - ? -
3 PsiBlast_PDB 87.1939% -21 - C5 -5CZT - ? -
28 PsiBlast_CBE 87.1639% -23 - C5 -5CZT - ? -
109 PsiBlast_CBE 83.6634% -4 - C5 -1OFO 3.9 AROG_YEAST
112 PsiBlast_CBE 83.3134% -1 - C5 -1OFA 5.3 AROG_YEAST
113 PsiBlast_CBE 82.9134% -3 - C5 -1OF8 3.1 AROG_YEAST
111 PsiBlast_CBE 82.2034% -9 - C5 -1OFA 5.5 AROG_YEAST