@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1544: (2018-01-14 )
MANILKTIIENDKGEIRRLEKMADKVFKYEDQMAALTDDQLKAKTVEFKERYQNGESLDSLLYEAFAVVREGAKRVLGLFPYKVQVMGGIVLHHGDVPEMRTGEGKTLTATMPVYLNALSGKGVHVVTVNEYLSERDATEMGELYSWLGLSVGINLATKSPMEKKEAYECDITYSTNSEIGFDYLRDNMVVRAENMVQRPLNYALVDEVDSILIDEARTPLIVSGANAVETSQLYHMADHYVKSLNKDDYIIDVQSKTIGLSDSGIDRAESYFKLENLYDIENVALTHFIDNALRANYIMLLDIDYVVSEEQEILIVDQFTGRTMEGRRYSDGLHQAIEAKEGVPIQDETKTSASITYQNLFRMYKKLSGMTGTGKTEEEEFREIYNIRVIPIPTNRPVQRIDHSDLLYASIESKFKAVVEDVKARYQKGQPVLVGTVAVETSDYISKKLVAAGVPHEVLNAKNHYREAQIIMNAGQRGAVTIATNMAGRGTDIKLGEGVRELGGLCVIGTERHESRRIDNQLRGRSGRQGDPGESQFYLSLEDDLMKRFGSERLKGIFERLNMSEEAIESRMLTRQVEAAQKRVEGNNHDTRKQVLQYDDVMREQREIIYAQRYDVITADRDLAPEIQAMIKRTIERVVDGHARAKQDEKLEAILNFAKYNLLPEDSITMEDLSGLSDKAIKEELFQRALKVYDSQVSKLRDEEAVKEFQKVLILRVVDNKWTDHIDALDQLRNAVGLRGYAQNNPVVEYQAEGFRMFNDMIGSIEFDVTRLMMKAQIHEQERPQAERHISTTATRNIAAHQASMPEDLDLNQIGRNELCPCGSGKKFKNCHGKRQ

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADP_A_8(1M74)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(1TF2)
SECA_BACSU
[Raw transfer]



ADP_A_2(4YS0)
SECA_THEMA
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]



ADP_A_3(3JUX)
SECA_THEMA
[Raw transfer]



ADP_A_2(5K9T)
?
[Raw transfer]



ADP_B_8(3BXZ)
SECA_ECOLI
[Raw transfer]
10 PsiBlast_PDB 80.0254% -32 - C4 -5EUL - SECA_BACSU -
2 PsiBlast_PDB 79.4955% 10 - C4 -1TF5 - SECA_BACSU -
1 PsiBlast_PDB 79.0255% 11 - C4 -1TF2 5.3 SECA_BACSU
21 PsiBlast_CBE 78.8657% 8 - C4 -3JV2 - SECA_BACSU -
58 Fugue 78.5556% 13 - C4 -1M6N - SECA_BACSU -
4 PsiBlast_PDB 78.5057% 9 - C4 -1M6N - SECA_BACSU -
5 PsiBlast_PDB 77.6357% 10 - C4 -1M74 5.4 SECA_BACSU
3 PsiBlast_PDB 77.4755% 12 - C4 -3IQY - SECA_BACSU -
8 PsiBlast_PDB 77.4357% 13 - C4 -3JV2 - SECA_BACSU -
45 HHSearch 77.3357% 9 - C4 -1M6N - SECA_BACSU -
6 PsiBlast_PDB 76.6357% 11 - C4 -3IQM - SECA_BACSU -
15 PsiBlast_PDB 75.3144% -26 - C4 -2FSI - SECA_ECOLI -
41 HHSearch 75.2447% 20 - C4 -4YS0 6.3 SECA_THEMA
13 PsiBlast_PDB 74.7144% -24 - C4 -2FSF - SECA_ECOLI -
14 PsiBlast_PDB 74.6744% -24 - C4 -2FSH - SECA_ECOLI -
36 HHSearch 74.4749% 39 - C4 -1NKT - SECA1_MYCTU -
7 PsiBlast_PDB 74.4357% 7 - C4 -2IBM - SECA_BACSU -
40 HHSearch 74.3748% 8 - C4 -2VDA - SECA_ECOLI -
44 HHSearch 74.1348% -10 - C4 -2FSF - SECA_ECOLI -
59 Fugue 73.1449% 25 - C4 -2IPC - SECA_THET8 -
42 HHSearch 72.9647% 27 - C4 -3JUX 5.3 SECA_THEMA
18 PsiBlast_PDB 72.7245% 23 - C4 -4YS0 6.3 SECA_THEMA
19 PsiBlast_PDB 71.0745% 31 - C4 -3JUX 5.3 SECA_THEMA
25 PsiBlast_CBE 66.3951% -20 - C4 -5K9T 5.8 ?
47 HHSearch 64.7160% -60 * C4 *3BXZ 5.8 SECA_ECOLI