@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1559: (2018-01-14 )
MIILKEFKPMSLLAFENVSKSYGATPALENVSLDIPAGKIVGLLGPNGSGKTTLIKLINGLLQPDQGRVLINDMDPSPATKAVVAYLPDTTYLNEQMKVKEALTYFKTFYKDFNLERAHHLLADLGIDENSRLKKLSKGNKEKVQLILVMSRDARLYVLDEPIGGVDPAARAYILNTIINNYSPTSTVLISTHLISDIEPILDEIVFLKDGKVVRQGNVDDIRYESGESIDQLFRQEFKA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_5(5EG1)
MCJD_ECOLX
[Raw transfer]



ANP_B_6(4PL0)
MCJD_ECOLX
[Raw transfer]



ATP_J_5(4YMU)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]
1 PsiBlast_PDB 91.1233% -54 - C1 -4RVC - ? -
7 PsiBlast_PDB 74.6527% -34 - C1 -4P32 6.1 LPTB_ECOLI
4 PsiBlast_PDB 74.4331% -26 - C1 -4WBS - ? -
6 PsiBlast_PDB 71.4628% -25 - C1 -4QC2 - ? -
8 PsiBlast_PDB 70.3427% -29 - C1 -4P33 2.5 LPTB_ECOLI
20 PsiBlast_PDB 69.4727% -31 - C1 -4P31 - LPTB_ECOLI -
38 HHSearch 66.1424% -42 - C1 -4YER 6.0 ?
35 HHSearch 63.0325% -29 - C1 -3FVQ - FBPC_NEIG1 -
34 HHSearch 61.7323% -46 * C1 *3RLF - MALK_ECOLI -
14 PsiBlast_PDB 61.0926% -19 - C1 -1G6H - LIVG_METJA -
33 HHSearch 60.6123% -44 - C1 -2AWN - MALK_ECOLI -
2 PsiBlast_PDB 58.7828% -9 - C1 -1VPL - ? -
3 PsiBlast_PDB 58.4328% -29 - C1 -5X5Y - ? -
9 PsiBlast_PDB 56.6826% -27 - C1 -1G9X - LIVG_METJA -
27 Fugue 56.3025% 9 - C1 -1Z47 - ? -
42 HHSearch 54.4325% -5 - C1 -4PL0 5.6 MCJD_ECOLX
39 HHSearch 54.2725% -29 - C1 -5MKK - ? -
22 Fugue 54.2624% -6 - C1 -3TUZ - METN_ECOLI -
43 HHSearch 53.9825% -6 - C1 -5EG1 5.8 MCJD_ECOLX
49 HHSearch 51.9824% -36 - C1 -2YYZ - ? -