@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1631: (2018-01-16 )
MPKTLTEKLNAIKATGKGIFVPYIMAGDHEKGLDGLGETIHFLEDLGVSAIEVGIPFSDPVADGPVIEEAGLRSLAHGTSTQALVETLKTIETEIPLVIMTYFNPLFQYGVENFVKDLADTAVKGLIIPDLPHEHANFVEPFLADTDIALIPLVSLTTGIERQKELIEGAEGFVYAVAINGVTGKSGNYRADLDKHLAQLHQVADIPVLTGFGVSSQADLERFNAVSDGVIVGSKIVKALHQGEPIQDFIRQAVAYQK

Atome Classification :

(23 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

IGP_A_4(2RH9)
TRPA_SALTY
[Raw transfer]




GOL_C_6(5KIN)
TRPA_STRPN
[Raw transfer]




HE1_A_4(1C8V)
TRPA_SALTY
[Raw transfer]




F19_A_3(2CLO)
TRPA_SALTY
[Raw transfer]




HSP_A_5(1CW2)
TRPA_SALTY
[Raw transfer]




IPL_A_3(1QOP)
TRPA_SALTY
[Raw transfer]




F19_A_4(2CLH)
TRPA_SALTY
[Raw transfer]




HE1_A_5(1C29)
TRPA_SALTY
[Raw transfer]




F9F_A_3(2CLL)
TRPA_SALTY
[Raw transfer]




IAV_E_5(1K7F)
TRPA_SALTY
[Raw transfer]




G3H_A_3(2CLK)
TRPA_SALTY
[Raw transfer]




HF1_A_5(1C9D)
TRPA_SALTY
[Raw transfer]




IAG_A_4(1K7E)
TRPA_SALTY
[Raw transfer]




G3P_C_8(5EY5)
?
[Raw transfer]




G3P_A_4(2TSY)
TRPA_SALTY
[Raw transfer]




13P_A_4(1K8Y)
TRPA_SALTY
[Raw transfer]




IPL_A_6(1WXJ)
TRPA_THET2
[Raw transfer]




F6F_A_4(4ZQC)
TRPA_SALTY
[Raw transfer]




F6F_A_4(4WX2)
TRPA_SALTY
[Raw transfer]




EDO_A_3(3NAV)
TRPA_VIBCH
[Raw transfer]




PEG_A_6(4KKX)
TRPA_SALTY
[Raw transfer]




21 PsiBlast_CBE 99.9198%-175 - C3 -5KIN - TRPA_STRPN -
1 PsiBlast_PDB 98.4998%-173 - C3 -5KIN - TRPA_STRPN -
96 HHSearch 97.9898%-163 - C3 -5KIN 2.2 TRPA_STRPN
22 PsiBlast_CBE 69.1738%-105 - C3 -5EY5 3.0 ?
92 HHSearch 65.0830%-100 - C3 -5KMY - TRPA_LEGPA -
2 PsiBlast_PDB 63.9632% -70 - C3 -1RD5 - TRPA_MAIZE -
9 PsiBlast_PDB 63.5032%-107 - C3 -5KMY - TRPA_LEGPA -
115 Fugue 63.1026% -97 - C3 -2TYS - TRPA_SALTY -
3 PsiBlast_PDB 62.7332% -58 - C3 -1TJR - TRPA_MAIZE -
107 HHSearch 62.6434% -50 - C3 -1TJR - TRPA_MAIZE -
109 HHSearch 62.4634% -78 - C3 -1RD5 - TRPA_MAIZE -
94 HHSearch 61.9831% -83 - C3 -5TCH - ? -
6 PsiBlast_PDB 61.5333%-106 - C3 -5K9X - TRPA_LEGPH -
106 HHSearch 61.3032% -96 - C3 -3VND - ? -
23 PsiBlast_CBE 61.1132% -83 - C3 -1RD5 - TRPA_MAIZE -
104 HHSearch 60.5227% -83 - C3 -3NAV - TRPA_VIBCH -
102 HHSearch 60.4531% -80 - C3 -1GEQ - TRPA_PYRFU -
97 HHSearch 60.3630% -51 - C3 -2EKC - TRPA_AQUAE -
105 HHSearch 59.6027% -90 - C3 -3NAV 2.7 TRPA_VIBCH
101 HHSearch 59.4827% -58 - C3 -5CGQ - TRPA_SALTY -
59 PsiBlast_CBE 56.1131% -65 - C3 -4KKX 2.5 TRPA_SALTY
58 PsiBlast_CBE 54.4231% -75 - C3 -4WX2 4.2 TRPA_SALTY
8 PsiBlast_PDB 52.5632% -43 - C3 -1WXJ 5.4 TRPA_THET2