@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1644: (2018-01-16 )
MIKFDNIQIKYGDFVAIDNLNLDIHEGEFFTFLGPSGCGKSTTLRALVGFLDPSSGSIEVNGTDVTHLEPEKRGIGIVFQSYALFPTMTVFDNIAFGLKVKKVAPDVIKAKVSAVAAKIKISDQQLQRNVSELSGGQQQRVALARALVLEPKILCLDEPLSNLDAKLRVDLRKELKRLQKELGITTLYVTHDQEEALTLSDRIAVFNNGYIEQVGTPVEIYHNSQTEFVCDFIGDINVLTDETVHEVLLKNTSVFLEDKKGYIRLEKVRFNRETKQDFILKGTIIDVEFSGVTIHYTIKVSESQILNVTSIDSQAAIRSVGESVELFITPSDVLQF

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_B_6(3C4J)
?
[Raw transfer]



ANP_J_5(3C41)
?
[Raw transfer]



AGS_A_4(3C4J)
?
[Raw transfer]



ANP_K_6(3C41)
?
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



ADP_A_5(2Q0H)
?
[Raw transfer]



ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_C_3(1VCI)
?
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ACP_B_6(5X40)
CBIO_RHOCB
[Raw transfer]



AT4_B_6(2OLK)
?
[Raw transfer]



AT4_C_7(2OLK)
?
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]



IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]
4 PsiBlast_PDB 86.3742%-103 - C1 -2YYZ - ? -
136 HHSearch 84.2844%-103 - C1 -2YYZ - ? -
131 HHSearch 81.9840% -98 - C1 -3RLF - MALK_ECOLI -
147 HHSearch 81.6542%-111 - C1 -1V43 - ? -
132 HHSearch 81.0040% -99 - C1 -2AWN - MALK_ECOLI -
142 HHSearch 77.2444% -94 - C1 -2IT1 - ? -
14 PsiBlast_PDB 76.8348%-141 - C1 -3PUV - MALK_ECOLI -
2 PsiBlast_PDB 76.6752%-133 - C1 -1V43 - ? -
1 PsiBlast_PDB 76.1756%-130 - C1 -2IT1 - ? -
12 PsiBlast_PDB 75.7948%-143 - C1 -3PUZ - MALK_ECOLI -
3 PsiBlast_PDB 75.6652%-129 - C1 -1VCI 4.0 ?
37 PsiBlast_CBE 75.3848%-133 - C1 -2R6G - MALK_ECOLI (first) -
16 PsiBlast_PDB 75.3648%-139 - C1 -3PUX - MALK_ECOLI -
11 PsiBlast_PDB 75.2448%-140 - C1 -3PUY - MALK_ECOLI -
17 PsiBlast_PDB 74.8948%-141 - C1 -3RLF - MALK_ECOLI -
15 PsiBlast_PDB 74.7748%-137 - C1 -3PUW - MALK_ECOLI -
20 PsiBlast_PDB 74.7648%-138 - C1 -4KI0 - MALK_ECOLI -
24 PsiBlast_CBE 74.7448%-144 - C1 -3PUZ - MALK_ECOLI -
22 PsiBlast_CBE 74.3348%-135 - C1 -4KI0 - MALK_ECOLI -
23 PsiBlast_CBE 74.3048%-136 - C1 -3RLF - MALK_ECOLI -
143 HHSearch 71.6442% -9 - C1 -2D62 3.0 ?
5 PsiBlast_PDB 65.6251% -12 - C1 -2D62 3.0 ?
149 HHSearch 51.3534% -68 - C1 -4YER 6.4 ?
95 PsiBlast_CBE 37.7033% 31 - C1 -3TIF 3.8 Y796_METJA