@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1657: (2018-01-16 )
MASGFHLQSERDFMSIIQKLWWFFKLEKRRYLVGIVALVLVSVLNLIPPMVMGRVIDAITSGQLTQQDLLLSLFYLLLAAFGMYYLRYVWRMYILGTSYCLGQIMRSRLFKHFTKMSSAFYQTYRTGDLMAHATNDINALTRLAGGGVMSAVDASITALVTLLTMLFSISWQMTLVAILPLPFMAYATSRLGRKTHKAFGESQAAFSELNNKVQESVSGIKVTKSFGYQADELKSFQAVNELTFQKNLQTMKYDSLFDPMVLLFVGSSYVLTLLVGSLVVQEGQITVGNLVTFISYLDMLVWPLMAIGFLFNTTQRGKVSYQRIENLLSQESPVQDPEFPLDGIENGRLEYAIDSFAFENEETLTDIHFSLAKGQTLGLVGQTGSGKTSLIKLLLREYDVDKGAIYLNGHDIRDYRLTDLRSLMGYVPQDQFLFATSILDNIRFGNPNLPLSAVEEATKLARVYQDIVDMPQGFDTLIGEKGVSLSGGQKQRLAMSRAMILDPDILILDDSLSAVDAKTEYAIIDNLKETRKDKTTIITAHRLSAVVHADLILVLQNGQIIERGRHEDLLALDGWYAQTYQSQQLEMKGEEDAE

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ADP_A_3(1JJ7)

[Raw transfer]




ADP_A_2(5DGX)

[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




97 HHSearch 80.3031% -74 - C2 -5MKK - ? -
104 HHSearch 79.0030% -85 - C2 -3QF4 - Y288_THEMA -
103 HHSearch 78.9330% - - C2 -4Q4H - Y288_THEMA -
8 PsiBlast_PDB 77.7831% - - C2 -4Q4H - Y288_THEMA -
1 PsiBlast_PDB 77.7732% - - C2 -3B5X - MSBA_VIBCH -
99 HHSearch 77.1332% - - C2 -3B5X - MSBA_VIBCH -
2 PsiBlast_PDB 74.3431% -49 - C2 -5MKK - ? -
108 HHSearch 73.7029% -47 - C2 -5MKK - ? -
29 PsiBlast_CBE 73.3431% - - C2 -3B5Z - MSBA_SALTY -
28 PsiBlast_CBE 73.3431% - - C2 -3B5Z - MSBA_SALTY -
27 PsiBlast_CBE 73.3331% - - C2 -3B5Z - MSBA_SALTY -
11 PsiBlast_PDB 73.3331% - - C2 -3B5Z - MSBA_SALTY -
22 PsiBlast_CBE 73.1831% -12 - C2 -2HYD - Y1866_STAAM -
30 PsiBlast_CBE 73.1431% - - C2 -3B5Y - MSBA_SALTY -
32 PsiBlast_CBE 73.1331% - - C2 -3B5Y - MSBA_SALTY -
31 PsiBlast_CBE 73.1331% - - C2 -3B5Y - MSBA_SALTY -
10 PsiBlast_PDB 73.1231% - - C2 -3B5Y - MSBA_SALTY -
21 PsiBlast_CBE 72.4331% -11 - C2 -2ONJ - Y1866_STAAM -
3 PsiBlast_PDB 71.5331% -14 - C2 -2HYD - Y1866_STAAM -
5 PsiBlast_PDB 71.4131% -13 - C2 -4A82 - Y1866_STAAM -
85 PsiBlast_CBE 29.7437% -26 - C2 -4MKI 1.5 ECFA2_CALS4
84 PsiBlast_CBE 26.5737% -19 - C2 -4MKI 4.2 ECFA2_CALS4