Binding Site Information :
Doc...
Information extracted from the bests complexes created by comparative docking.



Prediction Binding Site :


Binding Site Prediction
[Download fasta file] - [Download text file]

Binding Site Number :C1_S1
Best Complexes choosen after comparative docking [pKd > 3] : 5 (5 maxi)

Complexes [Theoretical pKd]FileVolume (A3)
(FPocket)
Hydrophobicity
Score(FPocket)
Contacts Ligand/Receptor [<4A] in Site C1_S1
Complex: GLC_A_4(4H7V) / Model_67(4H7V/A) = [4.8] Download293.7410.05MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN
Complex: BGC_A_2(4WLC) / Model_7(4WLC/A) = [4.6] Download265.3316.73MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN
Complex: NOJ_A_5(2PWD) / Model_33(2PWD/A) = [3.9] Download183.534.89MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN
Complex: CTS_B_6(2PWG) / Model_38(2PWG/B) = [3.2] Download270.8510.22MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN
Complex: ISL_A_4(4HA1) / Model_63(4HA1/A) = [3.1] Download603.9715.08MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN
Consensus
[pKd Mean = 3.92]
-323
(s=145)
11
(s=4)
MTLDKGKVVYQIYPKSYKDTTENGIGDFRGIIEKIPYLAKLGVDMVWLNPFYPSPQRDNGYDISDYMAVDPLFGDMADFEEMVCVGKEHKIDFMLDMVLNHCSTEHEWFQKALAGDKYYQDFFFIQDQPTDWQSKFGGSAWAPFGDTGKYYLHLFDETQADLNWRNPNVRKELFKVVNFWRDKGVKGFRFDVINLIGKDEVSVDCPENEGKPAYTDKPIVHNYLRMMNQATFGSDDSFMTVGEMSSTTMENCVLYSSPDRQELSMTFNFHHLKVDYKDGQKWTLAPFDFEELKSLYHSWGKEMSDKDGWSALFWNNHDQPRALNRFVDIQNFRKEGATMLAASIHLSRGTPYIYMGEEIGMIDPDYDSMADYVDVESLNAYQMLLEEGKSQQEAFQIIQAKSRDNSRIPMQWDASENAGFSTGTPWLKAGKSYKYINVENEIQGPIFTFYQDLIRLRKEMPIISEGSYKPAFEDSKQVYAFERQFEDQKLLVLNNFYAKEVEIDLPAVYQNGQILISNYEDAEVSEKILLKPYQTLAIYVN



Statistical distribution of contacts between receptors and ligands in all complexes :
(only contacts < 8A are taken into consideration)


Res_NameRes_NumRes_AtNb_ContactsNb_ComplexesNb[At_Ligand]
GLN11CD252[O],
GLN11NE2857[O], 1[C],
TYR13CE11359[O], 4[C],
TYR13CD1555[O],
TYR13CZ555[O],
TRP47NE1151[O],
TRP47CE2551[C], 4[O],
TRP47CZ21558[O], 7[C],
TRP47CZ3454[O],
ASN49CG1455[C], 9[O],
ASN49OD11058[O], 2[C],
ASN49ND22157[O], 14[C],
PRO50CG36515[O], 1[N], 20[C],
PRO50CD25511[O], 14[C],
ASP58OD159531[C], 2[N], 26[O],
ASP58OD266527[O], 2[N], 37[C],
ASP58CG57525[O], 2[N], 30[C],
ASN59ND2151[O],
TYR61CD160533[C], 2[N], 25[O],
TYR61CD260525[O], 2[N], 33[C],
TYR61CE260525[O], 2[N], 33[C],
TYR61CG60533[C], 2[N], 25[O],
TYR61CZ60525[O], 2[N], 33[C],
TYR61CE160533[C], 2[N], 25[O],
ASP62OD1755[O], 2[C],
ASP62CG353[O],
ILE63CG1151[O],
ASP96OD131513[O], 1[N], 17[C],
ASP96CG25513[C], 1[N], 11[O],
ASP96OD232518[C], 1[N], 13[O],
VAL98CG144530[C], 2[N], 12[O],
VAL98CG245514[O], 2[N], 29[C],
ASN100CG1155[C], 5[O], 1[N],
ASN100ND21859[C], 2[N], 7[O],
HIS101NE248515[O], 2[N], 31[C],
HIS101CD233518[C], 2[N], 13[O],
HIS101CG23513[C], 2[N], 8[O],
HIS101ND135512[O], 2[N], 21[C],
HIS101CE150533[C], 2[N], 15[O],
LYS135CG33511[O], 2[N], 20[C],
LYS135CD46517[O], 2[N], 27[C],
LYS135CE46517[O], 2[N], 27[C],
LYS135NZ45526[C], 2[N], 17[O],
PHE136CZ67538[C], 2[N], 27[O],
PHE136CD238515[O], 23[C],
PHE136CD139525[C], 14[O],
PHE136CE165537[C], 2[N], 26[O],
PHE136CG30512[O], 18[C],
PHE136CE262523[O], 2[N], 37[C],
PHE155CG59537[C], 2[N], 20[O],
PHE155CE267538[C], 2[N], 27[O],
PHE155CD156518[O], 2[N], 36[C],
PHE155CD264538[C], 2[N], 24[O],
PHE155CZ66527[O], 2[N], 37[C],
PHE155CE160536[C], 2[N], 22[O],
ASP156CG451[C], 3[O],
ASP156OD2653[O], 3[C],
ASP156OD1151[O],
GLN159CG25511[O], 14[C],
GLN159NE250530[C], 2[N], 18[O],
GLN159CD32513[O], 2[N], 17[C],
GLN159OE132517[C], 2[N], 13[O],
ARG189CZ46527[C], 2[N], 17[O],
ARG189CD1556[O], 1[N], 8[C],
ARG189CG353[O],
ARG189NE26513[C], 1[N], 12[O],
ASP191CG64527[O], 2[N], 35[C],
ASP191OD264535[C], 2[N], 27[O],
ASP191OD167537[C], 2[N], 28[O],
VAL192CG165536[C], 2[N], 27[O],
VAL192CG254517[O], 2[N], 35[C],
ASN194ND2151[C],
ASN194OD1151[C],
LEU195CD118511[C], 2[N], 5[O],
LEU195CG352[C], 1[O],
GLU243CD61522[O], 2[N], 37[C],
GLU243OE268528[O], 2[N], 38[C],
GLU243OE163525[O], 2[N], 36[C],
GLU243CG38513[O], 2[N], 23[C],
SER245OG30518[C], 2[N], 10[O],
SER246OG552[O], 3[C],
PHE269CD21359[C], 4[O],
PHE269CE12058[O], 1[N], 11[C],
PHE269CZ2759[O], 1[N], 17[C],
PHE269CG955[C], 4[O],
PHE269CD11155[C], 6[O],
PHE269CE227516[C], 1[N], 10[O],
LYS273NZ1557[C], 8[O],
LYS273CE1356[C], 7[O],
LYS273CG351[C], 2[O],
LYS273CD955[C], 4[O],
LYS277CE251[O], 1[C],
LYS277NZ151[O],
LYS277CD251[C], 1[O],
LYS281CD1055[O], 5[C],
LYS281NZ1558[C], 7[O],
LYS281CG754[C], 3[O],
LYS281CE1156[C], 5[O],
ASN316OD123510[C], 13[O],
ASN316ND227515[C], 12[O],
ASN316CG22513[O], 9[C],
HIS317NE265526[O], 2[N], 37[C],
HIS317CE154531[C], 2[N], 21[O],
HIS317ND139522[C], 17[O],
HIS317CD257523[O], 2[N], 32[C],
HIS317CG40521[C], 19[O],
ASP318OD169538[C], 2[N], 29[O],
ASP318OD270538[C], 2[N], 30[O],
ASP318CG69529[O], 2[N], 38[C],
GLN319OE1452[O], 2[C],
GLN319CD754[O], 3[C],
GLN319CG553[O], 2[C],
GLN319NE21156[C], 5[O],
PRO320CD151[O],
ASP374OD117512[O], 5[C],
ASP374OD214512[O], 2[C],
ASP374CG1152[C], 9[O],
VAL375CG2252[O],
VAL375CG11356[C], 7[O],
GLU376OE226513[C], 13[O],
GLU376OE119511[O], 8[C],
GLU376CD17510[O], 7[C],
GLU376CG1359[O], 4[C],
ARG403CZ70538[C], 2[N], 30[O],
ARG403NE55533[C], 1[N], 21[O],
ARG403CD54531[C], 1[N], 22[O],
ARG403CG28512[C], 16[O],
ARG407CZ33517[O], 16[C],
ARG407CD454[O],
ARG407NE21514[O], 7[C],
Total = 130



Download csv file of statistical distribution of contacts