@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1715: (2018-01-18 )
MKSYQAVYQILSKETDYISGEKIAEKLSLSRTSIWKAIKRLEQEGIEINSIKNRGYKLMNGDLILPEILEENLPIKVSFKPETKSTQLDAKEAIDLGHEANTLYLASYQTAGRGRFQRSFYSPQGGIYMTLHLKPNLPYDKLPSYTLLVAGAVYKAIKNLTLIDVDIKWVNDIYLNNHKIGGILTEAMTSVETGLVTDIIIGVGINFTIKDFPQELKEKAASLFKATAPITRNELIIEIWRAFFETPAEELLYLYKKQSFILGKEVTFTLEQKDYKGLAKDISENGKLLVQCDNGKEIWLNSGEISLNSWK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

BT5_A_2(3V8L)
?
[Raw transfer]



BTX_A_2(4DQ2)
?
[Raw transfer]



BT5_A_2(3RIR)
?
[Raw transfer]



32G_A_2(3V7R)
?
[Raw transfer]



C77_A_2(3V7C)
?
[Raw transfer]



36F_A_2(3V7S)
?
[Raw transfer]



BTN_A_2(3V8K)
?
[Raw transfer]



BTN_A_2(3RKY)
?
[Raw transfer]



BC4_A_2(4HA8)
?
[Raw transfer]
8 PsiBlast_PDB 83.7032% 41 - C4 -3V7S 9.4 ?
6 PsiBlast_PDB 83.7032% 37 - C4 -4DQ2 9.7 ?
4 PsiBlast_PDB 83.5832% 42 - C4 -3RKY 5.2 ?
12 PsiBlast_PDB 83.5432% 37 - C4 -3V8L 10.3 ?
5 PsiBlast_PDB 83.3832% 42 - C4 -4HA8 5.6 ?
7 PsiBlast_PDB 83.3532% 38 - C4 -3V7C 9.1 ?
1 PsiBlast_PDB 83.0232% 42 - C4 -3RIR 8.8 ?
2 PsiBlast_PDB 82.8132% 41 - C4 -3RKW - ? -
9 PsiBlast_PDB 82.7532% 40 - C4 -3V7R 10.2 ?
11 PsiBlast_PDB 82.4532% 41 - C4 -3V8K 5.5 ?
31 HHSearch 81.6527% -25 * C4 *2EWN - BIRA_ECOLI -
10 PsiBlast_PDB 81.4532% 34 - C4 -3V8J - ? -
30 HHSearch 80.1627% -48 - C4 -1BIA - BIRA_ECOLI -
28 HHSearch 78.3231% 45 - C4 -3RKW - ? -
29 HHSearch 76.8631% 39 - C4 -3V8J - ? -
15 PsiBlast_PDB 73.4228% 17 - C4 -2EWN - BIRA_ECOLI -
3 PsiBlast_PDB 72.9232% - - C4 -3RKX - ? -
50 Fugue 72.4427% -69 - C4 -1WNL - ? -
13 PsiBlast_PDB 70.6828% -4 - C4 -4WF2 - BIRA_ECOLI -
17 PsiBlast_PDB 70.6228% -4 - C4 -1BIB - BIRA_ECOLI -