@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1799: (2018-01-20 )
MRIADYSVTKAVLERHGFTFKKSFGQNFLTDTNILQKIVDTAEIDDQVNVIEIGPGIGALTEFLAERAAQVMAFEIDHRLVPILADTLRDFDNVTVVNEDILKVDLAQHIQNFKNPNLPIKVVANLPYYITTPILMHLIESGIPFSEFVVMMQKEVADRISAQPNTKAYGSLSIAVQYYMTAKVAFIVPRTVFVPAPNVDSAILKMVRRPEPAVAVEDENFFFKVSKASFTHRRKTLWNNLTGYFGKTEEVKDKLTKALDQAGLSPSVRGEALSLAEFAGLADALKGQGL

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ADN_A_2(3FUU)
RSMA_THET8
[Raw transfer]




MTA_A_2(3FUW)
RSMA_THET8
[Raw transfer]




SAH_A_2(3GRR)
RSMA_METJA
[Raw transfer]




MTA_A_4(3FUX)
RSMA_THET8
[Raw transfer]




MTA_C_6(3FUX)
RSMA_THET8
[Raw transfer]




MTA_C_6(3FUX)
RSMA_THET8
[Raw transfer]




MTA_B_5(3FUX)
RSMA_THET8
[Raw transfer]




SAH_A_4(3FTF)
RSMA_AQUAE
[Raw transfer]




ADN_A_2(3GRV)
RSMA_METJA
[Raw transfer]




AMP_A_2(3GRU)
RSMA_METJA
[Raw transfer]




AMP_A_2(3GRU)
RSMA_METJA
[Raw transfer]




38 HHSearch 95.6939%-143 - C2 -3FUX 6.3 RSMA_THET8
22 PsiBlast_CBE 94.6938%-119 - C2 -3FUX 6.2 RSMA_THET8
21 PsiBlast_CBE 94.4138%-119 - C2 -3FUX 6.3 RSMA_THET8
37 HHSearch 94.1439%-139 - C- -3FUT - RSMA_THET8 -
3 PsiBlast_PDB 93.6538%-119 - C2 -3FUX 5.2 RSMA_THET8
1 PsiBlast_PDB 92.7138%-118 - C2 -3FUU 6.4 RSMA_THET8
4 PsiBlast_PDB 92.0138%-115 - C- -3FUT - RSMA_THET8 -
2 PsiBlast_PDB 91.8338%-116 - C2 -3FUW 6.7 RSMA_THET8
34 HHSearch 87.5633%-150 - C2 -1QYR - RSMA_ECOLI -
43 HHSearch 86.4836%-126 - C2 -3FYC - RSMA_METJA -
35 HHSearch 86.1236%-123 * C2 *3GRU 5.4 RSMA_METJA
7 PsiBlast_PDB 85.7531%-148 - C2 -4ADV - RSMA_ECOLI -
6 PsiBlast_PDB 85.0631%-149 - C2 -1QYR - RSMA_ECOLI -
5 PsiBlast_PDB 83.5831%-148 - C2 -3TPZ - RSMA_ECOLI -
45 HHSearch 76.5826%-148 - C2 -1QAO - ERM_BACIU -
44 HHSearch 76.3926%-152 - C2 -1QAM - ERM_BACIU -
49 Fugue 72.8227% -49 - C2 -1ZQ9 - DIM1_HUMAN -
32 HHSearch 71.3527% -38 - C- -2H1R - ? -
9 PsiBlast_PDB 71.0139% -49 - C2 -3GRU 5.4 RSMA_METJA
14 PsiBlast_PDB 70.9938% -49 - C2 -3FYC - RSMA_METJA -
8 PsiBlast_PDB 70.4639% -48 - C2 -3GRR 8.3 RSMA_METJA
10 PsiBlast_PDB 69.6739% -47 - C2 -3GRV 5.7 RSMA_METJA