@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1817: (2018-01-20 )
MTVVKVEKLSKKIKDKEILRNISFEINDGECVALIGPNGAGKTTLLDCLLGDKLVTSGQVSIQGLPVTSSKLDYTRAYLPQENIIVQKLKVKELIAFFQRIYPNPLSNQEIDQLLQFVKQQKEQLAEKLSGGQKRLFSFILTLIGRPKIVFLDEPTASMDTSTRQRFWEIVQELKAQGVTILYSSHYIEEVEHTADRILLLNKGELIRDTTPLAMRSEEIEKHFILPIAYKEVVEQSNLVENWTLKQDSLQVVTREADAFWELLAQAGCRMQEIEVNNRSLLNTIFEETQKGDN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_6(3FVQ)
FBPC_NEIG1
[Raw transfer]



ATP_A_3(3FVQ)
FBPC_NEIG1
[Raw transfer]



ACP_A_4(5X40)
CBIO_RHOCB
[Raw transfer]



ADP_A_3(4YER)
?
[Raw transfer]



ADP_A_3(4P32)
LPTB_ECOLI
[Raw transfer]



POP_A_9(2D62)
?
[Raw transfer]



GOL_B_11(4P33)
LPTB_ECOLI
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]
3 PsiBlast_PDB 84.9527% -33 - C1 -4YER 5.7 ?
1 PsiBlast_PDB 82.9834% -22 - C1 -1VPL - ? -
42 HHSearch 82.0827% -25 - C1 -4YER - ? -
19 PsiBlast_PDB 80.6432% -38 - C1 -2D62 3.1 ?
13 PsiBlast_PDB 75.4029% -27 - C1 -3FVQ 6.0 FBPC_NEIG1
23 PsiBlast_CBE 71.6633% -14 - C1 -4MKI 2.4 ECFA2_CALS4
24 PsiBlast_CBE 68.6533% -8 - C1 -4MKI 2.2 ECFA2_CALS4
56 HHSearch 67.8730% -20 - C1 -2IT1 - ? -
2 PsiBlast_PDB 66.8032% -3 - C1 -5X5Y - ? -
43 HHSearch 65.3825% -35 - C1 -3RLF - MALK_ECOLI -
6 PsiBlast_PDB 64.9927% -2 - C1 -4QC2 - ? -
47 HHSearch 64.6028% -18 - C1 -3FVQ 6.5 FBPC_NEIG1
12 PsiBlast_PDB 64.4627% -2 - C1 -4P32 5.4 LPTB_ECOLI
5 PsiBlast_PDB 63.5731% -8 - C1 -1Z47 - ? -
44 HHSearch 62.9425% -30 - C1 -2AWN - MALK_ECOLI -
46 HHSearch 61.3429% -20 - C1 -2YYZ - ? -
14 PsiBlast_PDB 61.1627% -2 - C1 -4P33 2.8 LPTB_ECOLI
15 PsiBlast_PDB 60.7827% -1 - C1 -4P31 - LPTB_ECOLI -
18 PsiBlast_PDB 60.2828% -30 - C1 -5X40 5.4 CBIO_RHOCB
4 PsiBlast_PDB 60.2233% -14 - C1 -4HZI - ? -