@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1839: (2018-01-20 )
MKKLVFVCLGNICRSPMAEFVMKSMTDNYEIQSRATSSWEHGNPIHKGTQGIFQQYEIPYDKNKTSLQISKEDFEAFDYIIGMDASNISDLRQMCPVDCQDKIYSFSSESVPDPWYTGDFEETYRRVQEGCQAWLERLEKES

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

4NP_D_4(1D1Q)
PPAL_YEAST
[Raw transfer]



MPO_B_8(4LRQ)
?
[Raw transfer]



6VX_A_2(5KQG)
PPAC_HUMAN
[Raw transfer]



PMS_A_5(4Z9A)
PPAC_HUMAN
[Raw transfer]



EPE_A_2(5JNV)
PPAC_BOVIN
[Raw transfer]



MES_A_2(5KQM)
PPAC_HUMAN
[Raw transfer]



MES_A_2(5JNT)
PPAC_HUMAN
[Raw transfer]



EPE_B_4(3IDO)
?
[Raw transfer]



B85_A_2(4Z9B)
PPAC_HUMAN
[Raw transfer]



EPE_A_3(3JS5)
?
[Raw transfer]



EPE_B_2(1DG9)
PPAC_BOVIN
[Raw transfer]



MES_B_2(5PNT)
PPAC_HUMAN
[Raw transfer]



EPE_A_3(3IDO)
?
[Raw transfer]



6VY_A_2(5KQL)
PPAC_HUMAN
[Raw transfer]



GOL_E_5(1D1Q)
PPAL_YEAST
[Raw transfer]



6LJ_A_3(5JNW)
PPAC_BOVIN
[Raw transfer]
1 PsiBlast_PDB 74.8662% 38 - C4 -5GOT - ? -
53 HHSearch 74.7261% 41 - C4 -5GOT - ? -
48 HHSearch 70.8924% -85 - C4 -2FEK - WZB_ECOLI -
62 HHSearch 70.0933% -7 - C4 -1D1Q 2.9 PPAL_YEAST
63 HHSearch 69.3633% -4 - C4 -1D1Q 4.9 PPAL_YEAST
57 HHSearch 68.7430% -1 - C4 -2CWD - ? -
58 HHSearch 68.6830% 2 - C4 -2CWD - ? -
50 HHSearch 67.4939% 11 - C4 -3ROF - PTPA_STAAU -
9 PsiBlast_PDB 67.1939% - - C4 -4Z99 - PPAC_HUMAN -
60 HHSearch 67.0638% 15 - C4 -1Z12 - PPAC_BOVIN -
5 PsiBlast_PDB 66.3439% 11 - C4 -5PNT 3.7 PPAC_HUMAN
12 PsiBlast_PDB 65.8939% 19 - C4 -5JNT 4.1 PPAC_HUMAN
8 PsiBlast_PDB 65.4439% 19 - C4 -5JNS - PPAC_HUMAN -
33 PsiBlast_CBE 65.1936% 19 - C4 -1XWW - PPAC_HUMAN -
13 PsiBlast_PDB 65.1139% 17 - C4 -5KQG 7.5 PPAC_HUMAN
3 PsiBlast_PDB 65.0038% 45 - C4 -3ROF - PTPA_STAAU -
14 PsiBlast_PDB 64.9839% 16 - C4 -5KQL 6.9 PPAC_HUMAN
15 PsiBlast_PDB 64.7539% 16 - C4 -5KQM 4.1 PPAC_HUMAN
16 PsiBlast_PDB 64.7139% 20 - C4 -5KQP - PPAC_HUMAN -
10 PsiBlast_PDB 64.4639% 24 - C4 -4Z9A 4.5 PPAC_HUMAN
11 PsiBlast_PDB 63.5239% 19 - C4 -4Z9B 5.9 PPAC_HUMAN
19 PsiBlast_PDB 62.6436% 20 - C4 -1DG9 5.0 PPAC_BOVIN
35 PsiBlast_CBE 56.7131% 25 - C4 -3IDO 4.7 ?
36 PsiBlast_CBE 54.9031% 23 - C4 -3IDO 4.7 ?
34 PsiBlast_CBE 54.2031% 24 - C4 -3JS5 4.5 ?