@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1885: (2018-01-21 )
MAVANCAKYNIRRSKMKTVQFFWHYFKVYKFSFVVVILMIVLATFAQSLFPVFSGQAVTQLANLVQAYQNGNPELVWQSLSGIMVNLGLLVLVLFISSVIYMCLMTRVIAESTNEMRKGLFGKLAQLTVSFFDRRQDGDILSHFTSDLDNILQAFNESLIQVMSNIVLYIGLILVMFSRNVTLALITIASTPLAFLMLIFIVKMARKYTNLQQKEVGKLNAYMDESISGQKAVIVQGIQEDMMAGFLEQNERVRKATFKGRMFSGILFPVMNGMSLINTAIVIFAGSAVLLNDKSIETSTALGLIVMFAQFSQQYYQPIIQVAASWGSLQLAFTGAERIQEMFDAEEEIRPEKAPTFTKLQESVEISHIDFSYLPDKPILKDVSISAPKGQMTAVVGPTGSGKTTIMNLINRFYDVDAGGIYFDGKDIRGYDLDSLRSKVGIVLQDSVLFSGTIRDNIRFGVPDASQEMVEVAAKATHIHDYIESLPDKYDTLIDDDQSIFSAGQKQLISIARTLMTDPEVLILDEATSNVDTVTESKIQHAMEVVVAGRTSFVIAHRLKTILNADQIIVLKDGEVIERGNHHELLKLGGFYSELYHNQFVFE

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ADP_A_3(3NHA)

[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ADP_A_2(3NHB)

[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ATP_A_2(3NH9)

[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



AGS_A_3(4S0F)
?
[Raw transfer]



ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]



ANP_D_7(3B5Y)
MSBA_SALTY
[Raw transfer]



ANP_A_6(3B5Y)
MSBA_SALTY
[Raw transfer]



ANP_C_8(3B5Y)
MSBA_SALTY
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]



ADP_C_7(3B5Z)
MSBA_SALTY
[Raw transfer]



ADP_B_6(3B5Z)
MSBA_SALTY
[Raw transfer]



ADP_D_8(3B5Z)
MSBA_SALTY
[Raw transfer]



TBU_A_7(1GAJ)
LIVG_METJA
[Raw transfer]
101 HHSearch 87.1839%-143 - C1 -3QF4 - Y288_THEMA -
102 HHSearch 81.3339% - - C1 -4Q4H - Y288_THEMA -
3 PsiBlast_PDB 80.3538% - - C1 -4Q4H - Y288_THEMA -
6 PsiBlast_PDB 75.7531% - - C1 -3B5X - MSBA_VIBCH -
99 HHSearch 72.6731% - - C1 -3B5X - MSBA_VIBCH -
1 PsiBlast_PDB 69.5938% 5 - C1 -3QF4 - Y288_THEMA -
106 HHSearch 69.3430% -64 - C1 -5MKK - ? -
20 PsiBlast_PDB 68.9829% 0 - C- -5KPI - MDR1A_MOUSE -
19 PsiBlast_PDB 68.9829% 0 - C- -3G5U - MDR1A_MOUSE -
27 PsiBlast_CBE 68.1932% - - C1 -3B5Z 2.3 MSBA_SALTY
11 PsiBlast_PDB 68.1932% - - C1 -3B5Z 2.3 MSBA_SALTY
28 PsiBlast_CBE 68.1732% - - C1 -3B5Z 2.9 MSBA_SALTY
31 PsiBlast_CBE 68.0232% - - C1 -3B5Y 1.9 MSBA_SALTY
30 PsiBlast_CBE 68.0232% - - C1 -3B5Y 1.9 MSBA_SALTY
10 PsiBlast_PDB 68.0232% - - C1 -3B5Y 2.1 MSBA_SALTY
103 HHSearch 67.9527% - - C1 -4Q4H - ? -
5 PsiBlast_PDB 67.9533% - - C1 -3B5W - MSBA_ECOLI -
4 PsiBlast_PDB 67.7937% -1 - C1 -4Q4J - Y288_THEMA -
2 PsiBlast_PDB 67.3038% 6 - C1 -4Q4A - Y288_THEMA -
26 PsiBlast_CBE 66.9132% - - C1 -3B5Z 2.5 MSBA_SALTY
29 PsiBlast_CBE 66.7532% - - C1 -3B5Y 1.9 MSBA_SALTY
17 PsiBlast_PDB 44.6730% -11 - C1 -4S0F 5.6 ?
36 PsiBlast_CBE 39.4744% 43 - C1 -3NHA 6.8
35 PsiBlast_CBE 37.8644% 40 - C1 -3NHB 6.7
90 PsiBlast_CBE 25.6532% -35 - C1 -1GAJ 3.7 LIVG_METJA