@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1888: (2018-01-22 )
MAIEKLSPGMQQYVDIKKQYPDAFLLFRMGDFYELFYEDAVNAAQILEISLTSRNKNADNPIPMAGVPYHSAQQYIDVLIEQGYKVAIAEQMEDPKQAVGVVKREVVQVITPGTVVDSSKPDSQNNFLVSIDREGNQFGLAYMDLVTGDFYVTGLLDFTLVCGEIRNLKAREVVLGYDLSEEEEQILSRQMNLVLSYEKESFEDLHLLDLRLATVEQTASSKLLQYVHRTQMRELNHLKPVIRYEIKDFLQMDYATKASLDLVENARSGKKQGSLFWLLDETKTAMGMRLLRSWIHRPLIDKERIVQRQEVVQVFLDHFFERSDLTDSLKGVYDIERLASRVSFGKTNPKDLLQLATTLSSVPRIRAILEGMEQPTLAYLIAQLDAIPELESLISAAIAPEAPHVITDGGIIRTGFDETLDKYRCVLREGTSWIAEIEAKERENSGISTLKIDYNKKDGYYFHVTNSQLGNVPAHFFRKATLKNSERFGTEELARIEGDMLEAREKSANLEYEIFMRIREEVGKYIQRLQALAQGIATVDVLQSLAVVAETQHLIRPEFGDDSQIDIRKGRHAVVEKVMGAQTYIPNTIQMAEDTSIQLVTGPNMSGKSTYMRQLAMTAVMAQLGSYVPAESAHLPIFDAIFTRIGAADDLVSGQSTFMVEMMEANNAISHATKNSLILFDELGRGTATYDGMALAQSIIEYIHEHIGAKTLFATHYHELTSLESSLQHLVNVHVATLEQDGQVTFLHKIEPGPADKSYGIHVAKIAGLPADLLARADKILTQLENQGTESPPPMRQTSAVTEQISLFDRAEEHPILAELAKLDVYNMTPMQVMNVLVELKQKL

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_E_3(3K0S)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1WBB)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1W7A)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1OH8)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1OH6)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1OH5)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1OH7)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1WB9)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_1(1WBD)
MUTS_ECOLI
[Raw transfer]
-
NACID_E_5(3ZLJ)
MUTS_ECOLI
[Raw transfer]
-
NACID_F_2(1OH8)
MUTS_ECOLI
[Raw transfer]
-
13 PsiBlast_PDB 88.7139% -47 - C3 -1EWQ - MUTS_THEAQ -
35 HHSearch 88.3538% -21 - C3 -1WB9 - MUTS_ECOLI -
14 PsiBlast_PDB 88.0039% -50 - C3 -1FW6 - MUTS_THEAQ -
9 PsiBlast_PDB 87.2537% -20 - C3 -1WB9 - MUTS_ECOLI -
12 PsiBlast_PDB 87.2136% -18 - C3 -1E3M - MUTS_ECOLI -
1 PsiBlast_PDB 87.1937% -23 - C3 -1OH5 - MUTS_ECOLI -
8 PsiBlast_PDB 87.1437% -19 - C3 -3K0S - MUTS_ECOLI -
10 PsiBlast_PDB 86.5637% -20 - C3 -1WBB - MUTS_ECOLI -
4 PsiBlast_PDB 86.4137% -18 - C3 -1OH8 7.4 MUTS_ECOLI
7 PsiBlast_PDB 86.2837% -19 - C3 -1WBD - MUTS_ECOLI -
5 PsiBlast_PDB 86.1537% -14 - C3 -2WTU - MUTS_ECOLI -
3 PsiBlast_PDB 86.0037% -18 - C3 -1OH7 - MUTS_ECOLI -
2 PsiBlast_PDB 85.9137% -19 - C3 -1OH6 - MUTS_ECOLI -
30 PsiBlast_CBE 85.9037% -16 - C3 -1WB9 3.7 MUTS_ECOLI
6 PsiBlast_PDB 84.4837% -13 - C3 -3ZLJ - MUTS_ECOLI -
23 PsiBlast_CBE 84.3637% -15 - C3 -1W7A 3.2 MUTS_ECOLI
31 PsiBlast_CBE 84.3337% -17 - C3 -1WBB 3.6 MUTS_ECOLI
28 PsiBlast_CBE 84.2637% -14 * C3 *1WBD 2.4 MUTS_ECOLI
25 PsiBlast_CBE 84.0437% -15 - C3 -1OH7 3.9 MUTS_ECOLI
29 PsiBlast_CBE 83.8737% -13 - C3 -3K0S 3.8 MUTS_ECOLI
26 PsiBlast_CBE 83.7637% -16 - C3 -1OH6 3.5 MUTS_ECOLI
24 PsiBlast_CBE 83.5437% -16 - C3 -1OH8 3.2 MUTS_ECOLI
27 PsiBlast_CBE 83.2037% -17 - C3 -1OH5 3.5 MUTS_ECOLI
21 PsiBlast_CBE 81.3637% -9 - C3 -3ZLJ 3.5 MUTS_ECOLI