@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1917: (2018-01-22 )
MKKRQSGVLMHISSLPGAYGIGSFGQSAYDFVDFLVRTKQRYWQILPLGATSYGDSPYQSFSAFAGNTHFIDLDILVEQGLLEASDLEGVDFGSDASEVDYAKIYYARRPLLEKAVKRFFEVGDVKDFEKFAQDNQSWLELFAEYMAIKEYFDNLAWTEWPDADARARKASALESYREQLADKLVYHRVTQYFFFQQWLKLKAYANDNHIEIVGDMPIYVAEDSSDMWANPHLFKTDVNGKATCIAGCPPDEFSVTGQLWGNPIYDWEAMDKDGYKWWIERLRESFKIYDIVRIDHFRGFESYWEIPAGSDTAAPGEWVKGPGYKLFAAVKEELGELNIIAEDLGFMTDEVIELRERTGFPGMKILQFAFNPEDESIDSPHLAPANSVMYTGTHDNNTVLGWYRNEIDDATREYMARYTNRKEYETVVHAMLRTVFSSVSFMAIATMQDLLELDEAARMNFPSTLGGNWSWRMTEDQLTPAVEEGLLDLTTIYRRINENLVDLKK

Atome Classification :

(26 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ACR_B_16(5CSY)
DPE1_ARATH
[Raw transfer]




GLC_A_8(5CPS)
DPE1_ARATH
[Raw transfer]




GLC_B_24(5CPS)
DPE1_ARATH
[Raw transfer]




AGL_B_17(5CSU)
DPE1_ARATH
[Raw transfer]




GOL_A_4(1X1N)
DPEP_SOLTU
[Raw transfer]




GOL_A_3(1X1N)
DPEP_SOLTU
[Raw transfer]




GOL_A_4(1X1N)
DPEP_SOLTU
[Raw transfer]




BTB_A_2(5B68)
?
[Raw transfer]




AGL_A_9(5CSU)
DPE1_ARATH
[Raw transfer]




GLC_A_9(5CPS)
DPE1_ARATH
[Raw transfer]




GLC_A_7(5CSU)
DPE1_ARATH
[Raw transfer]




EDO_A_5(5CPQ)
DPE1_ARATH
[Raw transfer]




BGC_A_3(5CQ1)
DPE1_ARATH
[Raw transfer]




BGC_A_3(5CPT)
DPE1_ARATH
[Raw transfer]




GLC_B_15(5CQ1)
DPE1_ARATH
[Raw transfer]




GLC_B_18(5CSU)
DPE1_ARATH
[Raw transfer]




GLC_A_4(5CQ1)
DPE1_ARATH
[Raw transfer]




GLC_B_14(5CPT)
DPE1_ARATH
[Raw transfer]




GLC_B_26(5CPS)
DPE1_ARATH
[Raw transfer]




GLC_A_7(5CSY)
DPE1_ARATH
[Raw transfer]




GLC_B_26(5CPS)
DPE1_ARATH
[Raw transfer]




GLC_A_4(5CPT)
DPE1_ARATH
[Raw transfer]




EDO_A_14(5CPS)
DPE1_ARATH
[Raw transfer]




GLC_A_9(5JIW)
MALQ_THETH
[Raw transfer]




GLC_A_9(5JIW)
MALQ_THETH
[Raw transfer]




32 HHSearch 88.8346% -16 - C4 -5JIW 3.8 MALQ_THETH
9 PsiBlast_PDB 88.0344% -23 - C4 -2X1I - ? -
33 HHSearch 87.6746% -11 - C4 -1CWY - MALQ_THETH -
1 PsiBlast_PDB 87.6146% -20 - C4 -1FP8 - MALQ_THETH -
8 PsiBlast_PDB 87.1345% -22 - C4 -5JIW 3.8 MALQ_THETH
49 Fugue 87.0346% 1 - C4 -1CWY - MALQ_THETH -
4 PsiBlast_PDB 86.6646% -18 - C4 -1ESW - MALQ_THETH -
6 PsiBlast_PDB 86.6246% -18 - C4 -2OWW - MALQ_THETH -
3 PsiBlast_PDB 86.4346% -17 - C4 -1CWY - MALQ_THETH -
7 PsiBlast_PDB 86.4146% -19 - C4 -2OWX - MALQ_THETH -
5 PsiBlast_PDB 86.2346% -19 - C4 -2OWC - MALQ_THETH -
2 PsiBlast_PDB 85.8346% -17 - C4 -1FP9 - MALQ_THETH -
21 PsiBlast_CBE 85.6139% -14 - C4 -5CSY 8.3 DPE1_ARATH
13 PsiBlast_PDB 85.5239% -16 - C4 -5CPS 3.1 DPE1_ARATH
16 PsiBlast_PDB 85.3739% -15 - C4 -5CSU 3.0 DPE1_ARATH
22 PsiBlast_CBE 85.3639% -15 - C4 -5CSU 3.0 DPE1_ARATH
15 PsiBlast_PDB 85.1539% -16 - C4 -5CQ1 2.7 DPE1_ARATH
14 PsiBlast_PDB 84.7939% -17 - C4 -5CPT 3.4 DPE1_ARATH
25 PsiBlast_CBE 84.6539% -19 - C4 -5CPS 2.9 DPE1_ARATH
24 PsiBlast_CBE 84.0939% -17 - C4 -5CPT 3.4 DPE1_ARATH
12 PsiBlast_PDB 84.0839% -17 - C4 -5CPQ 3.4 DPE1_ARATH
23 PsiBlast_CBE 83.8339% -15 - C4 -5CQ1 1.9 DPE1_ARATH
17 PsiBlast_PDB 83.6039% -18 - C4 -5CSY 2.9 DPE1_ARATH
11 PsiBlast_PDB 83.5539% 4 - C4 -1X1N 2.9 DPEP_SOLTU
31 HHSearch 81.7040% 19 - C4 -5CPS 2.4 DPE1_ARATH
35 HHSearch 81.1040% 33 * C4 *1X1N 2.9 DPEP_SOLTU