@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1954: (2018-01-23 )
MVYYPQPVDNLVNKRSCKRRRYITMKKIKPHGPLPSQTQLAYLGDELAAFIHFGPNTFYDQEWGTGQEDPERFNPSQLDAREWVRVLKETGFKKLILVVKHHDGFVLYPTAHTDYSVKVSPWRRGKGDLLLEVSQAATEFDMDMGVYLSPWDAHSPLYHVDREADYNAYYLAQLKEILSNPNYGNAGKFAEVWMDGARGEGAQKVNYEFEKWFETIRDLQGDCLIFSTEGTSIRWIGNERGYAGDPLWQKVNLDKLGTEAELNYLQHGDPSGTIFSIGEADVSIRPGWFYHEDQDPKSLEELVEIYFHSVGRGTPLLLNIPPNQAGLFDAKDIERPYEFATYRNELYKEDLALGAEVSGPALSADFDCRHLTDGLETSSWASDADLPIQLELDLGSPKTFDVIELREDLKLGQRIAAFHVQVEVDGVWQEFGRGFTVGHKRLLRGPLVEAQKVRVMITEAQSIPVLTKISLYKTPGLSKKEVVQELAFAEKSLAVAKGETLHFRIERSRSSSSLEAKISIQPGTGVHGVAYQDEIYALAFQAGETEKRLTLPTLYFAGDKTLDFYLNLTVDGQLVDQLQVQVS

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GAL_A_6(3UET)
?
[Raw transfer]



OTN_B_8(4OZO)
?
[Raw transfer]



GOL_B_7(3EYP)
?
[Raw transfer]



GOL_A_2(5K9H)
?
[Raw transfer]



IPT_B_6(4OUE)
?
[Raw transfer]



GOL_A_4(3EYP)
?
[Raw transfer]



IPT_A_4(4OUE)
?
[Raw transfer]



GOL_B_7(3EYP)
?
[Raw transfer]



OTN_A_5(4OZO)
?
[Raw transfer]



DFU_B_6(3UES)
?
[Raw transfer]



GOL_A_2(5K9H)
?
[Raw transfer]



FUC_B_9(3UET)
?
[Raw transfer]



DFU_B_6(3UES)
?
[Raw transfer]



FUC_A_4(3UET)
?
[Raw transfer]



TA9_A_5(2XII)
?
[Raw transfer]



DFU_A_3(3UES)
?
[Raw transfer]



EDO_A_4(4ZRX)
?
[Raw transfer]



EDO_A_4(4ZRX)
?
[Raw transfer]



EAT_A_3(4J28)
?
[Raw transfer]



K80_A_3(4JFU)
?
[Raw transfer]



1KN_A_3(4JFT)
?
[Raw transfer]



GAL_B_11(3UET)
?
[Raw transfer]



NAG_B_10(3UET)
?
[Raw transfer]



EDO_B_12(3UET)
?
[Raw transfer]



NAG_A_5(3UET)
?
[Raw transfer]
25 PsiBlast_CBE 75.1334% -23 - C2 -3UET 3.2 ?
2 PsiBlast_PDB 74.7936% -5 - C2 -5K9H 3.0 ?
50 HHSearch 74.1537% -18 - C2 -3UES 3.4 ?
24 PsiBlast_CBE 73.7934% -19 - C2 -3UES 3.4 ?
7 PsiBlast_PDB 73.7634% -21 - C2 -3UET 3.2 ?
6 PsiBlast_PDB 73.2634% -21 - C2 -3UES 3.4 ?
53 HHSearch 72.8436% 9 - C2 -4ZRX 2.6 ?
52 HHSearch 72.7733% 1 - C2 -5K9H 3.0 ?
70 Fugue 71.5735% 11 - C2 -3EYP - ? -
54 HHSearch 70.0535% 17 - C2 -3EYP 2.7 ?
5 PsiBlast_PDB 67.7236% 42 - C2 -4OZO 3.2 ?
4 PsiBlast_PDB 67.7036% 40 - C2 -4OUE 3.3 ?
1 PsiBlast_PDB 67.6739% 3 * C2 *4ZRX 2.6 ?
22 PsiBlast_CBE 67.5636% 39 - C2 -4OUE 3.4 ?
21 PsiBlast_CBE 67.5336% 41 - C2 -4OZO 3.4 ?
23 PsiBlast_CBE 67.4836% 39 - C2 -3EYP 2.7 ?
3 PsiBlast_PDB 66.8936% 41 - C2 -3EYP 2.8 ?
51 HHSearch 61.6828% 29 - C2 -3GZA - ? -
8 PsiBlast_PDB 60.3325% 37 - C2 -3GZA - ? -
14 PsiBlast_PDB 45.2529% -84 - C2 -4JFU 3.5 ?