@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1963: (2018-01-23 )
MATFYVPAVNLIGKGVVNEVGPYIKELGYKKALLVTDKYIEGSDILPKTLKPLDTEGIEYVIFSDVEPNPTCKNVTDGVAALQEHGCDFIISLGGGSPQDAASCISIMATNGGKPQDYEGLHKSAKKGLPVVAINTTAGTSAEITINYVITDEERKVKMVMVDKNSLALISVNDPELMLSKPKGLTAATGMDALTHAVEALVTPGAYDVTKKLSIGAIELIKEYLPRAVANGHDIEAREGMVNAIFLGGMSFNNAGLGYVHSMAHQLGAVYNLPHGVCCAMLLPVIERENAKRVPEAFRNVAKALGLHVEGKSDQECADYAIAEIEKLSETVGIPKKLTELGIEEKDFDFEYLSKNALIDACAPGNPFMPTLEETIAFYKELF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAD_B_7(2BL4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(2BI4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(2BL4)
FUCO_ECOLI
[Raw transfer]



NAD_A_4(5BR4)
FUCO_ECOLI
[Raw transfer]



NAD_B_10(5BR4)
FUCO_ECOLI
[Raw transfer]



NAD_B_7(2BI4)
FUCO_ECOLI
[Raw transfer]



NAD_B_10(5BR4)
FUCO_ECOLI
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



APR_A_7(1RRM)
FUCO_ECOLI
[Raw transfer]



GOL_B_11(5BR4)
FUCO_ECOLI
[Raw transfer]



GOL_A_5(5BR4)
FUCO_ECOLI
[Raw transfer]



UNL_A_2(3RF7)
?
[Raw transfer]
60 HHSearch 96.5746% -96 - C5 -3BFJ - DHAT_KLEPN -
59 HHSearch 93.8946% -94 - C5 -3OX4 - ADH2_ZYMMO -
23 PsiBlast_CBE 93.3245% -94 - C5 -3OX4 - ADH2_ZYMMO -
22 PsiBlast_CBE 92.8345% -93 - C5 -3OX4 - ADH2_ZYMMO -
21 PsiBlast_CBE 92.7645% -92 - C5 -3OX4 - ADH2_ZYMMO -
2 PsiBlast_PDB 92.2845% -95 - C5 -3OX4 - ADH2_ZYMMO -
1 PsiBlast_PDB 92.1945% -97 - C5 -3OWO - ADH2_ZYMMO -
3 PsiBlast_PDB 88.6745% -35 - C5 -3BFJ - DHAT_KLEPN -
61 HHSearch 84.4041% -32 - C5 -1RRM 8.2 FUCO_ECOLI
63 HHSearch 83.3141% -30 - C5 -5BR4 11.0 FUCO_ECOLI
5 PsiBlast_PDB 82.6141% -30 - C5 -2BI4 7.9 FUCO_ECOLI
47 PsiBlast_CBE 82.4341% -32 - C5 -2BI4 7.5 FUCO_ECOLI
46 PsiBlast_CBE 82.4141% -29 - C5 -2BL4 8.4 FUCO_ECOLI
8 PsiBlast_PDB 82.1440% -31 - C5 -1RRM 8.2 FUCO_ECOLI
48 PsiBlast_CBE 81.9541% -29 - C5 -5BR4 11.0 FUCO_ECOLI
7 PsiBlast_PDB 81.9541% -30 - C5 -5BR4 11.1 FUCO_ECOLI
6 PsiBlast_PDB 80.6141% -25 - C5 -2BL4 7.9 FUCO_ECOLI
62 HHSearch 76.3643% 5 - C5 -4FR2 - ? -
4 PsiBlast_PDB 75.6242% 5 - C5 -4FR2 - ? -
74 HHSearch 69.4727% -34 - C5 -3IV7 - ? -