@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr2034: (2018-01-25 )
MTKPIILTGDRPTGKLHIGHYVGSLKNRVLLQEEDKYDMFVFLADQQALTDHAKDPQTIVESIGNVALDYLAVGLDPNKSTIFIQSQIPELAELSMYYMNLVSLARLERNPTVKTEISQKGFGESIPTGFLVYPIAQAADITAFKANYVPVGTDQKPMIEQTREIVRSFNNAYNCDVLVEPEGIYPENERAGRLPGLDGNAKMSKSLNNGIYLADDADTLRKKVMSMYTDPDHIRVEDPGKIEGNMVFHYLDVFGRPEDAQEIADMKERYQRGGLGDVKTKRYLLEILERELGPIRERRIEFAKDMGEVYNMIQKGSERAREVAGQTLSEVKGAMGLHYFN

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_B_5(1YID)
SYW2_DEIRA
[Raw transfer]




TRP_E_5(2A4M)
SYW2_DEIRA
[Raw transfer]




TRP_E_5(1YI8)
SYW2_DEIRA
[Raw transfer]




HRP_E_5(1YIA)
SYW2_DEIRA
[Raw transfer]




GOL_A_14(1I6M)
SYW_GEOSE
[Raw transfer]




LTN_A_5(1MAU)
SYW_GEOSE
[Raw transfer]




GOL_A_3(3N9I)
SYW_YERPE
[Raw transfer]




ADP_B_9(3TZL)
SYW_CAMJE
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




TRP_A_3(2G36)
SYW_THEMA
[Raw transfer]




AMP_B_7(5V0I)
SYW_ECOLI
[Raw transfer]




TRP_B_10(3TZL)
SYW_CAMJE
[Raw transfer]




AMP_A_3(5V0I)
SYW_ECOLI
[Raw transfer]




ANL_A_4(2OV4)
SYW_GEOSE
[Raw transfer]




42 HHSearch 95.2456% -93 - C4 -1YI8 - SYW2_DEIRA -
43 HHSearch 94.6956% -94 - C4 -2A4M - SYW2_DEIRA -
21 PsiBlast_CBE 93.7755% -93 - C4 -2A4M 3.4 SYW2_DEIRA
22 PsiBlast_CBE 93.0556% -98 - C4 -1YI8 2.6 SYW2_DEIRA
2 PsiBlast_PDB 92.2856% -95 - C4 -1YI8 - SYW2_DEIRA -
1 PsiBlast_PDB 92.1755% -92 - C4 -2A4M - SYW2_DEIRA -
3 PsiBlast_PDB 91.4756% -97 - C4 -1YIA 2.9 SYW2_DEIRA
4 PsiBlast_PDB 91.4556% -93 - C4 -1YID 4.7 SYW2_DEIRA
45 HHSearch 88.4044%-110 - C4 -2G36 3.8 SYW_THEMA
5 PsiBlast_PDB 85.6043%-110 - C4 -2G36 3.8 SYW_THEMA
52 HHSearch 81.1132%-119 - C4 -3TZL 5.8 SYW_CAMJE
20 PsiBlast_PDB 80.8331%-120 - C4 -3M5W - SYW_CAMJE -
51 HHSearch 79.4832%-114 - C4 -3TZL - SYW_CAMJE -
53 HHSearch 79.1633% -67 - C4 -5V0I - SYW_ECOLI -
6 PsiBlast_PDB 75.7840% -18 - C4 -2EL7 - ? -
62 Fugue 75.0133% -55 - C4 -1D2R - SYW_GEOSE -
36 PsiBlast_CBE 74.8732% -35 - C4 -5V0I 3.5 SYW_ECOLI
31 PsiBlast_CBE 73.5934% -25 - C4 -1MAW - SYW_GEOSE -
46 HHSearch 73.3335% -25 - C4 -3PRH - SYW_BACSU -
56 HHSearch 73.1634% -35 - C4 -1I6L - SYW_GEOSE -