@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKB4: (2017-10-25 )
MAEFKFTDLVEPVAVDKKTALRITVLGGGSFGTAMANLAARNGCDTMIWIRDAETAEEINKTHINKRYLPDFTLESSLRAVSDLEQAVCDRDIILVAIPSHSFRDVLKQIAPYITAQAVVSLTKGIEAKTFSFMSDIIREELPEVPYGVLSGPNLAKEIMAGMPSGTVIASDSELVRYAVQHALHSALFRVFGSDDVHGVELGGALKNIYAVAMGIGAAYKIGENTKSMILTRALAEMSRFAVKQGANPLTFLGLSGVGDLFATCNSPLSRNYQIGYALGSGKTLEQASKELGQTAEGINTIVQVRGKAQELDVYMPITNALYEVIFEGAPPLNIALSLMKNGHRSDVEFVLPHHEV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

13P_J_10(1WPQ)
GPDA_HUMAN
[Raw transfer]




13P_K_11(1WPQ)
GPDA_HUMAN
[Raw transfer]




G3P_B_6(1Z82)
?
[Raw transfer]




NDP_A_3(1Z82)
?
[Raw transfer]




1 PsiBlast_PDB 87.6434% -65 * C2 *3K96 - GPDA_COXBU -
21 PsiBlast_CBE 85.9134% -67 - C2 -3K96 - GPDA_COXBU -
61 HHSearch 82.7731% -59 - C2 -3K96 - GPDA_COXBU -
76 Fugue 80.6529% -50 - C2 -1EVY - GPDA_LEIME -
14 PsiBlast_PDB 79.9029% - - C2 -4FGW - GPD1_YEAST -
63 HHSearch 79.8337% -97 - C2 -1Z82 - ? -
62 HHSearch 79.6131% -59 - C2 -3K96 - GPDA_COXBU -
6 PsiBlast_PDB 79.1429% -50 - C2 -1M66 - GPDA_LEIME -
4 PsiBlast_PDB 78.9229% -52 - C2 -1EVZ - GPDA_LEIME -
3 PsiBlast_PDB 78.9129% -51 - C2 -1EVY - GPDA_LEIME -
9 PsiBlast_PDB 78.4329% -51 - C2 -1N1G - GPDA_LEIME -
5 PsiBlast_PDB 78.3829% -51 - C2 -1JDJ - GPDA_LEIME -
56 HHSearch 78.3028% -41 - C2 -1N1E - GPDA_LEIME -
57 HHSearch 78.2428% -46 - C2 -1EVY - GPDA_LEIME -
7 PsiBlast_PDB 78.0529% -54 - C2 -1M67 - GPDA_LEIME -
8 PsiBlast_PDB 78.0029% -44 - C2 -1N1E - GPDA_LEIME -
2 PsiBlast_PDB 77.7335%-113 - C2 -1Z82 11.9 ?
60 HHSearch 75.1927% - - C2 -4FGW - GPD1_YEAST -
10 PsiBlast_PDB 73.7531% -6 - C2 -2PLA - GPD1L_HUMAN -
22 PsiBlast_CBE 73.5231% -2 - C2 -2PLA - GPD1L_HUMAN -