@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKJ5: (2017-10-26 )
MVSAYNELPRTPANFVALSPLRYLERAAYIYPDQASIIHGNRQISWKQTYQRCRQFASQLQQLGIVKNDTVSVLLPNVPAMIEAHFAVPMAGAVLNTLNTRLDAKTIAFMLEHAETKVLLVDPEFVNLAREALSLIPNQHIIVIDVADEEYEGENQFLGSFEYEEWLAQGDANFEWQLPEDEWDAISLNYTSGTTGNPKGVVYHHRGAYLNAASNILACGMKPRAVYLWTLPLFHCNGWCFAWSIAASGGTNICLRKVDPELVMQLIAKHKVDYFCGAPIVLSMIINLPKEKQPSIEHHVEVMVAGAAPPVAVIEGMRNIGINVNHVYGLTETYGPSALCASQAGWSDLSITEQAQLHSRQGVPYPLQDSMRVLDPETMQPVPNDGETMGEIMFRGNIVMKGYLKNPKATEEAFAGGWFHTGDLAVCHPDGYAKITDRSKDIIISGGENISSLEVEDVLYKHPAVLTAAVVAKPDERWQEVPCAFIELKTEASVTPEEIIEHCQKELARFKVPKDVVITEIPKTSTGKLQKFILREWAKERA

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_6(1V25)
LCFCS_THET8
[Raw transfer]




ATP_A_8(5BUR)
MENE_BACSU
[Raw transfer]




AMP_A_3(5BSR)
4CL2_TOBAC
[Raw transfer]




GOL_B_21(3ETC)
?
[Raw transfer]




GOL_B_23(3ETC)
?
[Raw transfer]




1 PsiBlast_PDB 84.4637% -6 - C4 -1ULT - LCFCS_THET8 -
52 HHSearch 81.4826% -65 - C4 -4WV3 - ? -
21 PsiBlast_CBE 81.3637% -14 - C4 -1V25 5.4 LCFCS_THET8
51 HHSearch 81.1126% -63 - C4 -4WV3 - ? -
7 PsiBlast_PDB 79.2629% -46 - C4 -5X8G - ? -
6 PsiBlast_PDB 78.7629% -46 - C4 -5X8F - ? -
2 PsiBlast_PDB 78.6229% -63 - C4 -3R44 - FAC13_MYCTU -
5 PsiBlast_PDB 77.5129% -52 - C4 -5GTD - MENE_BACSU -
59 HHSearch 77.3530% -27 - C4 -3R44 - FAC13_MYCTU -
4 PsiBlast_PDB 76.4129% -52 - C4 -5BUS - MENE_BACSU -
56 HHSearch 75.8226%-111 * C4 *3IVR - ? -
3 PsiBlast_PDB 75.7029% -50 - C4 -5BUR 7.0 MENE_BACSU
57 HHSearch 75.5926%-113 - C4 -3IVR - ? -
8 PsiBlast_PDB 75.0526% -5 - C4 -4WV3 - ? -
43 HHSearch 74.4923% -44 - C4 -5UPS - ? -
13 PsiBlast_PDB 73.9428% -6 - C4 -5BSW - 4CL2_TOBAC -
10 PsiBlast_PDB 73.2329% 12 - C4 -5IE0 - 4CLLA_ARATH -
44 HHSearch 72.9023% -48 - C4 -5UPT - ? -
11 PsiBlast_PDB 72.8229% 13 - C4 -5IE2 - 4CLLA_ARATH -
17 PsiBlast_PDB 72.4527% 0 - C4 -5BST - 4CL2_TOBAC -