@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKK6: (2017-10-27 )
MQTLRASKCGLSTAQLPSSILDVIDSLTKAGYEAYIVGGGVRDLMLGLNPKDFDAVTNATPSQIKEVFGRRCRIIGRRFELAHVYSGRELIEVATFRAPPKKAVTSASGMILRDNNWGTIEQDFARRDFSINTLYYQPRKGIVLDFCKAIDDVKSKTLRLLGDPVQRFEEDPVRMLRTLRFAAKLNFKIDPAILDIFDVEMTQLLRDVSPHRLYDESQKLFTMGHLARVLPMLIAFGVWKQLFADIRPDLTPFIQRAAKNTDQRIQVGKTINPAFFYAVLLWQPFLERCDFYLSKGVVPAEARAQAGLDVLKRQATRTVIPRFAETFIREVWEMQTRLLNPKPQQIEALASHARFRAGFDFLLLREKSGDDTTQGMGSWWEAYQEMSNDEKEAAISQYNRQKAKSRRKVAAEPVESNKVDTEIEPLVDVPEPRSRRGKKERARQEQSIDRFIEKSSAAQTNVMSDHPILKRKRVQRDLSQVIFGPTQ

Atome Classification :

(31 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_3(3AQN)
?
[Raw transfer]



ATP_B_5(4WC0)
?
[Raw transfer]



ATP_A_3(4WC0)
?
[Raw transfer]



APC_F_6(1VFG)
?
[Raw transfer]



APC_E_5(1VFG)
?
[Raw transfer]



ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



CTP_A_7(1MIY)
CCA_GEOSE
[Raw transfer]



CTP_A_3(4WC7)
?
[Raw transfer]



ATP_B_5(3AQN)
?
[Raw transfer]



CTP_A_3(4WC1)
?
[Raw transfer]



CTP_A_3(4WC5)
?
[Raw transfer]



CTP_B_4(4WC1)
?
[Raw transfer]



ATP_A_3(4WC6)
?
[Raw transfer]



APC_A_3(4WC2)
?
[Raw transfer]



ATP_A_3(4WC4)
?
[Raw transfer]



GOL_A_4(3AQL)
?
[Raw transfer]



GOL_A_4(3AQL)
?
[Raw transfer]



GOL_A_4(3AQL)
?
[Raw transfer]



GOL_B_5(3AQL)
?
[Raw transfer]
23 PsiBlast_CBE 86.9438% -80 - C5 -3AQL 3.2 ?
4 PsiBlast_PDB 86.8138% -73 - C5 -3AQK - ? -
22 PsiBlast_CBE 86.7738% -81 - C5 -3AQN 3.9 ?
1 PsiBlast_PDB 86.6138% -84 - C5 -3AQM - ? -
41 HHSearch 86.5438% -74 - C5 -3AQK - ? -
42 HHSearch 86.3038% -87 - C5 -3AQL 1.9 ?
2 PsiBlast_PDB 85.8938% -84 - C5 -3AQL 1.9 ?
3 PsiBlast_PDB 85.7838% -84 - C5 -3AQN 4.0 ?
31 Fugue 84.7239% -4 - C5 -3AQL 1.9 ?
35 Fugue 61.6322% -30 - C5 -4X4W - TRNT1_HUMAN -
45 HHSearch 59.5524% -16 - C5 -4X4W - TRNT1_HUMAN -
55 HHSearch 58.9024% -23 - C5 -4WBY - ? -
8 PsiBlast_PDB 57.8130%-130 - C5 -1MIV - CCA_GEOSE -
49 HHSearch 57.7424% 13 - C5 -5HC9 - ? -
43 HHSearch 57.3024% -44 - C5 -1MIV - CCA_GEOSE -
44 HHSearch 57.0824% -39 - C5 -1MIW - CCA_GEOSE -
9 PsiBlast_PDB 56.8830%-127 - C5 -1MIW 5.4 CCA_GEOSE
7 PsiBlast_PDB 56.8430%-123 - C5 -1MIY 3.7 CCA_GEOSE
6 PsiBlast_PDB 55.2829% 23 - C5 -4X4W - TRNT1_HUMAN -
51 HHSearch 54.8422% -9 - C5 -3WFO - ? -
13 PsiBlast_PDB 44.0736% -30 - C5 -4WC1 3.7 ?
14 PsiBlast_PDB 44.0136% -23 - C5 -4WC2 4.6 ?
18 PsiBlast_PDB 44.0036% -25 - C5 -4WC6 4.6 ?
25 PsiBlast_CBE 43.9936% -34 - C5 -4WC0 4.9 ?
17 PsiBlast_PDB 43.8336% -25 - C5 -4WC5 5.0 ?
24 PsiBlast_CBE 43.8136% -36 - C5 -4WC1 3.7 ?
26 PsiBlast_CBE 43.7836% -34 - C5 -1VFG 4.7 ?
12 PsiBlast_PDB 43.6336% -33 - C5 -4WC0 4.7 ?
19 PsiBlast_PDB 43.4036% -23 - C5 -4WC7 3.7 ?
16 PsiBlast_PDB 43.2436% -25 - C5 -4WC4 4.5 ?
10 PsiBlast_PDB 43.0936% -33 - C5 -1VFG 4.6 ?