@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKL2: (2017-10-27 )
MVTVREQLPEQLTELSEETTVEHAAETQVGLASWLDRVREILDGAELKQLEEVAHLTLQKELDSTVNHRSNTFATGVGMADILAHLHVDEDTLSAAMLYRSVREDITDIEEVKRKFGEQVYNLVKGTLAMGKLSELIEKNKRLEDHFNNNQREHLSGIYKMLISVTEDVRVVLIKLAERTYSLRELANSSRERQERVAREILTIYSPLAHRLGIAQLKWELEDLAFRYLAPDRYKEIASLLNEKRLEREHYIQFVIDRLKSELAAHGIEAEITGRAKHIYSIYRKMKSKNLSFDQLYDIRALRVLVNSVPECYHSLGIVHQIWRHIPHQFDDYITNPKANGYRSLHTAVIAENKSLEVQIRTHEMHDEAELGVCSHFNYKEGSKNTDHSFNHRLHSLRAVLEHYQERNETTVHQNEDETEGFDQLQDFEGFEKIYVFSRDGDIKELPRGSTVLDFAYHVHTEVGNKCYAARVNQRYVPLTYTLKTGEQVEILTKKDREPNRDWLVNSLGYIKTARARDKLRHWFRQQDRSKNLEVGRELLNKELSRLAIHPKSIDLNDYSSHFNVKTGDDILVSLVSGDISLHALINQINRQMHLDQDEPELVLKPTLNPRASHTLSAHGILIDGLDNVELHIAQCCQPVHGESIAGYITLNRGVSIHKVLCSDYQRMIKQEPERAVEADWEMQPTRGQSVQIVVEAYDRRGLLKDLTQVIFSDQINIRQVNTISEADGIANMKLLIEVKGLAQLSRLLARLEQQPGIISARRMIQGV

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_A_5(1VJ7)
RELA_STREQ
[Raw transfer]




GDP_A_5(1VJ7)
RELA_STREQ
[Raw transfer]




GOL_A_5(2BE3)
?
[Raw transfer]




40 Fugue 89.2636%-121 - C5 -1VJ7 5.2 RELA_STREQ
20 HHSearch 84.4534% -22 - C5 -1VJ7 5.2 RELA_STREQ
47 Fugue 55.5418% 23 - C3 -5MZ6 - ? -
45 Fugue 50.6717% 16 - C4 -4BS9 - ? -
32 HHSearch 47.7846%-159 - C6 -3HVZ - ? -
2 PsiBlast_PDB 46.7949%-169 - C6 -3HVZ - ? -
1 PsiBlast_PDB 46.0148%-110 - C6 -2KMM - ? -
35 HHSearch 44.8948%-110 - C6 -2KMM - ? -
21 HHSearch 44.0026% 64 - C5 -3NR1 - MESH1_HUMAN -
22 HHSearch 42.5028% -24 - C5 -3L9D - ? -
42 Fugue 42.1750% -48 - C6 -3HVZ - ? -
34 HHSearch 42.1622% -63 - C5 -1Y7P - Y1403_ARCFU -
23 HHSearch 41.9028% -25 - C5 -3L9D - ? -
27 HHSearch 40.9827% -46 - C5 -5F2V - YJBM_BACSU -
5 PsiBlast_PDB 40.8029% 96 - C5 -3NR1 - MESH1_HUMAN -
28 HHSearch 40.3813% -49 - C5 -4YF1 - ? -
37 HHSearch 40.3031% -90 - C6 -1WXQ - ? -
24 HHSearch 39.6934% 4 - C5 -2BE3 2.9 ?
29 HHSearch 39.0913% -87 - C5 -4YF1 - ? -
43 Fugue 38.9627% -23 - C5 -3IBW - ? -