@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKL3: (2017-10-27 )
MKQQAKSRKPQQPEYIFQVETLSHEGRGIAHYGSHPDHPADKHGKKVFIRYALPGETVKAQITHEAKRLEEAEMVALLAEPSANRVEAVCPHYGICGGCSMQHIHPDEQIRLKQNVLQSHLQHFAGIQPEQWLEPIRSLQSDYRRRARIGVRYLPKQDRLILGFREHHSNRLTSIHTCSVLDKKLSDSLPELRNLLQSLKGKVHIGHVELAKGDHETSLLVRHIEKLNNADVNQLRQFALHKGWQLYLQPKGPESLRRIDEEQGAMRLHYALNAFDVNFAFSPLDFTQVNATVNEQMVQLACELLQLQQGERVLDLFCGLGNFSLPLARCVGAKGVIVGVEASEEMVQRATDNVKRNNLVQASFFSQDLTKDFSHHSWANQGFDALLIDPPRAGAYEIIQYVPNFGAKRIVYVSCNPATLARDAGVLVQHGYQLKKAAVMDMFTHTEHVESIALFEKIQEIND

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SF4_A_6(2BH2)
RLMD_ECOLI
[Raw transfer]




SF4_A_2(1UWV)
RLMD_ECOLI
[Raw transfer]




2 PsiBlast_PDB 85.3737%-100 - C2 -1UWV 3.9 RLMD_ECOLI
74 HHSearch 84.7640% -86 - C2 -1UWV - RLMD_ECOLI -
1 PsiBlast_PDB 81.2037% -59 - C2 -2BH2 4.0 RLMD_ECOLI
21 PsiBlast_CBE 81.0537% -59 - C2 -2BH2 - RLMD_ECOLI -
7 PsiBlast_PDB 49.2427% -77 - C3 -1O54 - ? -
99 Fugue 48.0221% -21 - C2 -3BT7 - TRMA_ECOLI -
95 HHSearch 48.0119% -91 - C2 -2B3T - PRMC_ECOLI -
77 HHSearch 46.5519% -21 * C2 *3BT7 - TRMA_ECOLI -
89 HHSearch 46.3616% -65 - C2 -5CCX - TRM61_HUMAN -
88 HHSearch 46.0116% -64 - C2 -5CCB - TRM61_HUMAN -
13 PsiBlast_PDB 45.6229%-101 - C3 -1DL5 - PIMT_THEMA -
20 PsiBlast_PDB 45.5440%-124 - C3 -5C0O - TRMI_THET2 -
3 PsiBlast_PDB 45.3230% -61 - C3 -3BT7 - TRMA_ECOLI -
22 PsiBlast_CBE 43.8540%-114 - C3 -2PWY - TRMI_THET2 -
18 PsiBlast_PDB 41.5240%-114 - C3 -2PWY - TRMI_THET2 -
84 HHSearch 41.1818% -42 - C2 -5HJM - TAW22_PYRAB -
91 HHSearch 40.8421% -98 - C2 -1WY7 - ? -
92 HHSearch 40.5221% -97 - C2 -1WY7 - ? -
60 PsiBlast_CBE 40.5044% -85 - C3 -4M37 - ANM7_TRYB2 -
55 PsiBlast_CBE 40.3533%-110 - C3 -3DUW - ? -