@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKL6: (2017-10-27 )
MSNFNKTLSKRLRLNHAYGQLIALIFVPIMILTCVGAFLVLTETSRSAKQQQLHHASAILARYNQIAKDLYTLVELQPDEYDHAQHIMQSMFSEKNLKRAALIDSNGQTYLSIGYRDNRYWPNSTQNDNFFGPISYNHNNIYGVRIIDTAGKPPVWLLIEMDNQPLELARYRILIALVITGLMTLLLLLLCLNFYSRRWIAPMYEIRMQLQRLNADTLDQHIVINSSGELRLLQRDIANVVKRLHFSFLELKEHTEQTEEDLRRTLDTLEVQNITYRQARDQAISSNQAKSVFLANISHELRTPLNSIDGFIHLLLRQQNLSNEQNLYLQTIRKSSAHLLALINDVLDFSKIDAGKLELETAPFDLEEAVFDVMDMLSPLAAQKHIAMAFYYADNIPQQVIGDALRFKQILTNLISNAIKFTPDGEIIVRVRMEHDDIGQCLLHFSVQDSGIGLSGTDRKKLFESFSQGDASVTRQFGGTGLGLAISKQLVHLMHGQIGFEDNQERAPTEKGSTFWFTAQFAVDEEHEIEHPHFEHLQVVSYLAHPATASVLRYYLENYQVPHIETQSILDLFSRLKHLDQKDNTWLIVDHSGDTEALLKEIRSRYQGNLAVYGYQMTLEPNMLTEYRARPLYQPLSRSGLIQLLSDQPIFEEEQQDFNGQGLHILAVDDHLPNLIVLEALLGELNVKTTKALSGQEALNIIQERIDQKLKPFDLVFMDIQMPVMSGIDTTRAIRSLESTLDGEMQLPIIALTAHALADEKQKLLKVGMNDYVTKPIQMEQIIQILTQWTKNNFTAQNLAKDHHVVAEALDPEILNWQQSLQLTANKEDLAQDLLKMLIDSFPTELEEIQQLIELEDFPQLEHVLHRLYGATRYVGTPKLQQVTGDFEQFISTLRKERRRADDGFIEEVMRRFDELGLVIKEVESAAHQILVIPD

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AN2_B_4(4U7O)
?
[Raw transfer]




AN2_A_3(4U7O)
?
[Raw transfer]




ACP_A_3(5C93)
?
[Raw transfer]




ATP_A_4(3SL2)

[Raw transfer]




ADP_A_5(4BIY)
CPXA_ECOLI
[Raw transfer]




ADP_A_3(4BIX)
CPXA_ECOLI
[Raw transfer]




118 HHSearch 86.4421% - - C3 -4I5S - ? -
114 Fugue 71.3820% - - C3 -4I5S - ? -
17 PsiBlast_PDB 70.8629% -98 - C3 -5LFK - ? -
15 PsiBlast_PDB 70.3829%-111 - C3 -4BIX 4.6 CPXA_ECOLI
14 PsiBlast_PDB 70.2829% -95 - C3 -4BIW - CPXA_ECOLI -
6 PsiBlast_PDB 70.2530% 2 - C3 -5C93 7.0 ?
8 PsiBlast_PDB 70.0531% -11 - C3 -4U7O 8.8 ?
9 PsiBlast_PDB 69.2331% -10 - C3 -4ZKI - ? -
16 PsiBlast_PDB 69.0429%-114 - C3 -4BIY 4.5 CPXA_ECOLI
20 PsiBlast_PDB 68.3929% -91 - C3 -4BIV - CPXA_ECOLI -
129 HHSearch 68.1029% 10 - C3 -5C93 - ? -
18 PsiBlast_PDB 67.8129% -98 - C3 -4BIU - CPXA_ECOLI -
130 HHSearch 67.2129% 14 * C3 *4U7O - ? -
21 PsiBlast_CBE 66.9532% 36 - C3 -4JAV - ? -
5 PsiBlast_PDB 66.7832% 31 - C3 -4JAV - ? -
2 PsiBlast_PDB 65.6032% 25 - C3 -4JAU - ? -
22 PsiBlast_CBE 65.3132% 32 - C3 -3DGE - ? -
1 PsiBlast_PDB 65.0132% 38 - C3 -4JAS - ? -
4 PsiBlast_PDB 64.9032% 37 - C3 -3DGE - ? -
3 PsiBlast_PDB 64.6832% 29 - C3 -2C2A - ? -