@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKM3: (2017-10-27 )
MEFIQANANWLYLVGAILFILTLRGLSGPKTAIQGNRYGMIAMAIAVVTTFFVANNPVIWMIGGAMVLGAIVGIARARTVPMTQMPETVALMHSLVGLAAVLIAVAAILHNNQLTALFAQNEAALTAAGVQHAHMSKVHLFELFVGCFVGAITFTASVFAYGKLAAKKWAKTISGAWVKPVQALIFVAMLACGFYFFTTGNMTAFWAMTALALAFGWVWIAPVGGGDMPVVVSLLNSFSGWAAAGIGFTLENNMLIVAGSLVGSSGAILSYIMCKAMNRSIINVLFGGAMGGAAVSTAAKGEQVQRNYRSGSADDAGFLMSNADSVVIVPGYGMAQGRAQNAVKELCEILKEQGVRVRFAIHPVAGRMPGHMNVLLAEADVAYEDILEMDEINSDFPATDVVLVIGANDVVNPAAKDDPGSPIYGMPILEAHKARTIMVIKRSMATGYAGLDNDLFYNEKTMMIFGDAKKVVEDMTKAINGTGH

Atome Classification :

(37 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_F_6(1U2G)

[Raw transfer]




TXP_C_4(2OOR)

[Raw transfer]




NDP_F_6(1U2G)

[Raw transfer]




NAP_B_4(1PNO)

[Raw transfer]




NDP_A_3(1PNQ)
PNTB_RHORT
[Raw transfer]




NAP_A_5(1DJL)
NNTM_HUMAN
[Raw transfer]




NAP_B_4(1PNO)

[Raw transfer]




NAP_C_9(4J16)
?
[Raw transfer]




NDP_B_4(1PNQ)

[Raw transfer]




NAP_A_3(1PNO)
PNTB_RHORT
[Raw transfer]




NAP_C_6(1U28)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




NAP_C_6(1NM5)

[Raw transfer]




NDP_F_6(1U2D)

[Raw transfer]




NAP_C_5(2FSV)

[Raw transfer]




NAP_C_8(2OO5)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




NAP_B_6(1DJL)

[Raw transfer]




NAP_A_2(1D4O)

[Raw transfer]




NAP_E_5(2FR8)

[Raw transfer]




NAP_E_5(1HZZ)

[Raw transfer]




NAP_C_5(1PTJ)

[Raw transfer]




NAP_C_6(2FRD)

[Raw transfer]




NAP_F_6(1U31)

[Raw transfer]




NAP_E_5(1U31)
NNTM_HUMAN
[Raw transfer]




NAP_C_5(2BRU)

[Raw transfer]




NAP_C_5(2BRU)

[Raw transfer]




NAP_A_2(1E3T)

[Raw transfer]




NAP_A_2(1E3T)

[Raw transfer]




NAP_A_2(1E3T)

[Raw transfer]




GOL_H_8(1PT9)

[Raw transfer]




GOL_B_8(1DJL)

[Raw transfer]




GOL_A_7(1DJL)
NNTM_HUMAN
[Raw transfer]




GOL_G_7(1PT9)
NNTM_HUMAN
[Raw transfer]




APR_E_5(1U2G)

[Raw transfer]




NAD_E_5(1U2D)

[Raw transfer]




NAD_B_5(2FRD)

[Raw transfer]




1 PsiBlast_PDB 79.3040%-158 - C8 -4O9U - ? -
15 PsiBlast_PDB 65.2260%-139 - C8 -1PNQ 13.9 PNTB_RHORT
5 PsiBlast_PDB 65.1559%-153 - C8 -1U28 13.1
49 HHSearch 64.9561%-143 - C8 -1PNO 13.6
22 PsiBlast_CBE 64.8160%-143 - C8 -1PNO 13.6
24 PsiBlast_CBE 64.7562%-154 - C8 -1XLT - PNTB_RHORT -
8 PsiBlast_PDB 64.5059%-148 - C8 -2FR8 12.2
10 PsiBlast_PDB 64.4859%-140 - C8 -2FSV 12.5
21 PsiBlast_CBE 64.4260%-143 - C8 -1PNQ 13.8
4 PsiBlast_PDB 64.2959%-146 - C8 -1NM5 13.1
48 HHSearch 64.0460%-140 - C8 -1U2G 13.1
12 PsiBlast_PDB 63.8562%-146 - C8 -2OO5 13.0
7 PsiBlast_PDB 63.8359%-140 - C8 -1U2G 13.1
23 PsiBlast_CBE 63.8062%-143 - C8 -1XLT - -
14 PsiBlast_PDB 63.6260%-137 - C8 -1PNO 14.2 PNTB_RHORT
66 Fugue 63.4950%-142 - C8 -1D4O 13.3
51 HHSearch 63.4950%-142 * C8 *1D4O 13.3
11 PsiBlast_PDB 63.4962%-148 - C8 -1PTJ 11.3
50 HHSearch 63.2562%-143 - C8 -1XLT - PNTB_RHORT -
16 PsiBlast_PDB 63.2262%-143 - C8 -1XLT - PNTB_RHORT -
30 PsiBlast_CBE 62.7753%-147 - C8 -4J16 12.5 ?
6 PsiBlast_PDB 62.6659%-140 - C8 -1U2D 12.6
9 PsiBlast_PDB 62.2059%-140 - C8 -2FRD 12.2
3 PsiBlast_PDB 61.4559%-150 - C8 -1HZZ 11.2
13 PsiBlast_PDB 61.2162%-143 - C8 -2OOR 12.6
20 PsiBlast_PDB 61.0850%-138 - C8 -1U31 12.3 NNTM_HUMAN
18 PsiBlast_PDB 60.6050%-136 - C8 -1DJL 13.1 NNTM_HUMAN
26 PsiBlast_CBE 59.1050%-142 - C8 -1PT9 2.2
27 PsiBlast_CBE 58.7250%-141 - C8 -1DJL 13.2
25 PsiBlast_CBE 58.6650%-142 - C8 -1U31 12.5
19 PsiBlast_PDB 58.4850%-137 - C8 -1PT9 2.3 NNTM_HUMAN
31 PsiBlast_CBE 57.5856%-142 - C8 -1D4O 13.3
52 HHSearch 57.0960%-130 - C8 -2BRU 11.8
17 PsiBlast_PDB 57.0960%-130 - C8 -2BRU 11.8
67 Fugue 56.4562%-133 - C8 -1E3T 7.1
47 HHSearch 56.0360%-133 - C8 -1E3T 7.1
2 PsiBlast_PDB 55.8959%-133 - C8 -1E3T 7.1