@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKM5: (2017-10-27 )
MQIGIPTETVVGENRVAATPETVKKLISAGHSVVIERGAGVKAAYIDSAYEQVGATITDDAYTGSQIILKVRAPQGGEIQKLAANTTVVAMFDPYRNTELDQFANQQVSAFALELLPRTLSRAQNMDVLSSQANLAGYKSVLLAAAEYQRMFPMLMTAAGTVKPARVVIMGVGVAGLQAVATAKRLGAIVEATDLRPTAKDQVESLGGKWLDVPMSEEEQQRAADAAKNGYGWMPGEQYIKDQAAIVDKAVSNADIVITTALLPGRDAPRLIKAETVAKMKPGSVILDMAVETGGNVEGSKVGETVVTENGVKILGIPNIPATVATEASALYARNVFNFVETLFDKEKNFAINQEDEIQKALLVTHGGQVLLKRG

Atome Classification :

(39 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_C_9(4J16)
?
[Raw transfer]




NAD_A_4(1NM5)
PNTAA_RHORT
[Raw transfer]




NAD_D_4(1HZZ)
PNTAA_RHORT
[Raw transfer]




NAD_A_4(2FSV)
PNTAA_RHORT
[Raw transfer]




NAD_A_4(2FRD)
PNTAA_RHORT
[Raw transfer]




TXD_A_9(2OO5)
PNTAA_RHORT
[Raw transfer]




NAD_D_4(1U2D)
PNTAA_RHORT
[Raw transfer]




NAD_B_4(2BRU)
PNTA_ECOLI
[Raw transfer]




APR_D_4(1U2G)
PNTAA_RHORT
[Raw transfer]




NAD_C_3(1X14)
PNTA_ECOLI
[Raw transfer]




NAD_B_5(4J16)
?
[Raw transfer]




NAD_A_4(1U28)
PNTAA_RHORT
[Raw transfer]




NAD_A_5(2OOR)
PNTAA_RHORT
[Raw transfer]




NAD_C_3(1X15)
PNTA_ECOLI
[Raw transfer]




APR_E_5(1U2G)
PNTAA_RHORT
[Raw transfer]




NAD_B_5(1NM5)
PNTAA_RHORT
[Raw transfer]




NAD_D_4(2FR8)
PNTAA_RHORT
[Raw transfer]




NAP_C_8(2OO5)
PNTAA_RHORT
[Raw transfer]




NAP_C_5(1PTJ)
PNTAA_RHORT
[Raw transfer]




GOL_B_6(1PTJ)
PNTAA_RHORT
[Raw transfer]




NAP_C_6(1NM5)
PNTAA_RHORT
[Raw transfer]




GOL_B_8(4IZI)
?
[Raw transfer]




GOL_A_3(4IZI)
?
[Raw transfer]




GOL_B_15(4IZH)
?
[Raw transfer]




NDP_F_6(1U2D)
PNTAA_RHORT
[Raw transfer]




NDP_F_6(1U2G)
PNTAA_RHORT
[Raw transfer]




NAP_E_5(1HZZ)
PNTAA_RHORT
[Raw transfer]




NAP_C_5(2FSV)
PNTAA_RHORT
[Raw transfer]




NAP_E_5(2FR8)
PNTAA_RHORT
[Raw transfer]




NAP_C_6(1U28)
PNTAA_RHORT
[Raw transfer]




TXP_C_4(2OOR)
PNTAA_RHORT
[Raw transfer]




NAP_C_6(2FRD)
PNTAA_RHORT
[Raw transfer]




12 PsiBlast_PDB 78.1249% -32 - C2 -4DIO - ? -
73 HHSearch 77.1945% -42 - C2 -3P2Y - ? -
40 PsiBlast_CBE 76.7041% -27 - C2 -1X14 7.8 PNTA_ECOLI
78 HHSearch 76.3747% -34 - C2 -4DIO - ? -
7 PsiBlast_PDB 76.3646% 9 - C2 -1U2G 7.3 PNTAA_RHORT
18 PsiBlast_PDB 76.2541% -23 - C2 -1X14 - PNTA_ECOLI -
13 PsiBlast_PDB 76.1746% 2 - C2 -2FSV 9.2 PNTAA_RHORT
9 PsiBlast_PDB 76.1446% 7 - C2 -2OO5 9.0 PNTAA_RHORT
79 HHSearch 76.0947% 13 - C2 -1F8G - PNTAA_RHORT -
80 HHSearch 75.5247% 3 * C2 *1L7D - PNTAA_RHORT -
75 HHSearch 75.4641% -21 - C2 -1X13 - -
3 PsiBlast_PDB 75.4346% 1 - C2 -1L7D - PNTAA_RHORT -
32 PsiBlast_CBE 75.0146% 5 - C2 -1L7E - PNTAA_RHORT -
15 PsiBlast_PDB 75.0046% -1 - C2 -2FR8 4.9 PNTAA_RHORT
34 PsiBlast_CBE 74.9446% 4 - C2 -2FRD 3.1 PNTAA_RHORT
35 PsiBlast_CBE 74.9046% -0 - C2 -2FSV 3.1 PNTAA_RHORT
23 PsiBlast_CBE 74.8746% 7 - C2 -2OO5 2.4 PNTAA_RHORT
31 PsiBlast_CBE 74.8146% -3 - C2 -1U28 3.0 PNTAA_RHORT
4 PsiBlast_PDB 74.8146% 7 - C2 -1L7E - PNTAA_RHORT -
39 PsiBlast_CBE 74.7841% -25 - C2 -1X15 6.9 PNTA_ECOLI
10 PsiBlast_PDB 74.6546% 9 - C2 -2OOR 8.1 PNTAA_RHORT
37 PsiBlast_CBE 74.5146% 1 - C2 -2FR8 2.9 PNTAA_RHORT
33 PsiBlast_CBE 74.5046% 1 - C2 -1HZZ 1.9 PNTAA_RHORT
21 PsiBlast_CBE 74.3946% 3 - C2 -1PTJ 3.2 PNTAA_RHORT
14 PsiBlast_PDB 74.2346% 3 - C2 -1NM5 8.3 PNTAA_RHORT
29 PsiBlast_CBE 74.0846% -0 - C2 -1U2G 6.5 PNTAA_RHORT
22 PsiBlast_CBE 74.0546% 3 - C2 -2OOR 2.6 PNTAA_RHORT
2 PsiBlast_PDB 73.5946% -0 - C2 -1HZZ 7.1 PNTAA_RHORT
36 PsiBlast_CBE 73.3446% 4 - C2 -1NM5 4.6 PNTAA_RHORT
6 PsiBlast_PDB 73.3146% 9 - C2 -1U2D 9.1 PNTAA_RHORT
5 PsiBlast_PDB 73.2746% 10 - C2 -1U28 8.1 PNTAA_RHORT
30 PsiBlast_CBE 73.2646% 7 - C2 -1U2D 2.3 PNTAA_RHORT
50 PsiBlast_CBE 72.7741% -27 - C2 -4IZI 2.2 ?
51 PsiBlast_CBE 72.6341% -26 - C2 -4IZI 2.1 ?
52 PsiBlast_CBE 72.0541% -31 - C2 -4IZH 2.2 ?
48 PsiBlast_CBE 71.9641% -27 - C2 -4J16 8.0 ?
49 PsiBlast_CBE 71.7341% -24 - C2 -4J16 Error ?
11 PsiBlast_PDB 71.1146% 10 - C2 -2FRD 8.6 PNTAA_RHORT
38 PsiBlast_CBE 70.4341% -24 - C2 -2BRU 8.3 PNTA_ECOLI