@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKP7: (2017-10-27 )
MELLSGGEMLVRALADEGVEHVFGYPGGAVLHIYDALFQQDKINHYLVRHEQAAGHMADAYSRATGKTGVVLVTSGPGATNTVTPIATAYMDSIPMVVLSGQVASHLIGEDAFQETDMVGISRPIVKHSFQVRHASEIPAIIKKAFYIASSGRPGPVVVDIPKDATNPAEKFAYEYPEKVKMRSYQPPSRGHSGQIRKAIDELLTAKRPVIYTGGGVVQGNASALLTELAHLLGYPVTNTLMGLGGFPGDDPQFIGMLGMHGTYEANMAMHHADVILAIGARFDDRVTNNPAKFCPNSKVIHVDIDPATISKTIMAHIPIVGAVEPVLQEMLAQLKQLNVSKPNPEAIAAWWSQINEWRKVHGLKYENPSDGTMKPQQVVETLYKVTNGDAIITSDVGQHQMFGALYYKYKRPRQWINSGGLGTMGVGLPYAMAAKLAFPDQQVVCITGEASIQMCIQELSTCKQYGLNVKILCLNNRALGMVKQWQDMNYEGRHSSSYVESLPDFAKLMEAYGHVGIQINHADELESKLAEAMAINDKCVFINVMVDRSEHVYPMQVAGQSMRDMWISKGERI

Atome Classification :

(28 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FAD_B_14(1T9A)
ILVB_YEAST
[Raw transfer]



FAD_A_3(5K2O)
ILVB_ARATH
[Raw transfer]



FAD_A_3(5K6R)
ILVB_ARATH
[Raw transfer]



FAD_A_3(5K3S)
ILVB_ARATH
[Raw transfer]



FAD_A_4(5FEM)
ILVB_YEAST
[Raw transfer]



60G_B_10(5FEM)
ILVB_YEAST
[Raw transfer]



FAD_B_11(1T9C)
ILVB_YEAST
[Raw transfer]



FAD_B_12(1T9B)
ILVB_YEAST
[Raw transfer]



FAD_B_8(5FEM)
ILVB_YEAST
[Raw transfer]



FAD_B_14(1N0H)
ILVB_YEAST
[Raw transfer]



FAD_A_3(5K6T)
ILVB_ARATH
[Raw transfer]



6QL_A_4(5K3S)
ILVB_ARATH
[Raw transfer]



1CS_B_11(1T9B)
ILVB_YEAST
[Raw transfer]



1SM_B_10(1T9C)
ILVB_YEAST
[Raw transfer]



1TB_B_11(1T9A)
ILVB_YEAST
[Raw transfer]



FAD_A_4(5INU)
ILVB_YEAST
[Raw transfer]



FAD_A_3(5K6Q)
?
[Raw transfer]



6R4_A_4(5K6T)
ILVB_ARATH
[Raw transfer]



6QK_A_4(5K2O)
ILVB_ARATH
[Raw transfer]



CIE_B_11(1N0H)
ILVB_YEAST
[Raw transfer]



FAD_B_12(5IMS)
ILVB_YEAST
[Raw transfer]



FAD_B_22(5INV)
ILVB_YEAST
[Raw transfer]



FAD_B_12(5INU)
ILVB_YEAST
[Raw transfer]



6R5_A_4(5K6R)
ILVB_ARATH
[Raw transfer]



TPP_A_6(5IMS)
ILVB_YEAST
[Raw transfer]



TPP_A_6(5INU)
ILVB_YEAST
[Raw transfer]



TPP_A_5(5INV)
ILVB_YEAST
[Raw transfer]



TPP_A_10(1JSC)
ILVB_YEAST
[Raw transfer]
2 PsiBlast_PDB 81.0144% -17 - C4 -1T9A - ILVB_YEAST -
26 PsiBlast_CBE 80.5444% -39 - C4 -1T9D - ILVB_YEAST -
5 PsiBlast_PDB 80.4044% -19 - C4 -1T9D - ILVB_YEAST -
29 PsiBlast_CBE 80.2144% -18 - C4 -1T9B 10.7 ILVB_YEAST
27 PsiBlast_CBE 80.1044% -28 - C4 -1T9D - ILVB_YEAST -
31 PsiBlast_CBE 79.9844% -20 - C4 -1N0H 12.4 ILVB_YEAST
24 PsiBlast_CBE 79.7844% -17 - C4 -5FEM 13.2 ILVB_YEAST
30 PsiBlast_CBE 79.7144% -21 - C4 -1T9A 12.9 ILVB_YEAST
3 PsiBlast_PDB 79.7144% -27 - C4 -1T9B - ILVB_YEAST -
1 PsiBlast_PDB 79.7044% -19 - C4 -1N0H - ILVB_YEAST -
25 PsiBlast_CBE 79.5544% -18 - C4 -1T9D - ILVB_YEAST -
28 PsiBlast_CBE 79.4544% -19 - C4 -1T9C 13.0 ILVB_YEAST
4 PsiBlast_PDB 79.4344% -18 - C4 -1T9C - ILVB_YEAST -
9 PsiBlast_PDB 79.3344% -27 - C4 -5INV 6.0 ILVB_YEAST
10 PsiBlast_PDB 79.1844% -25 - C4 -1JSC 6.2 ILVB_YEAST
44 HHSearch 79.1645% -21 * C4 *5FEM 13.0 ILVB_YEAST
7 PsiBlast_PDB 79.0744% -27 - C4 -5IMS 6.6 ILVB_YEAST
6 PsiBlast_PDB 79.0744% -17 - C4 -5FEM - ILVB_YEAST -
22 PsiBlast_CBE 79.0244% -38 - C4 -5INU 12.8 ILVB_YEAST
23 PsiBlast_CBE 78.6944% -37 - C4 -5IMS 13.0 ILVB_YEAST
21 PsiBlast_CBE 78.0044% -26 - C4 -5INV 11.0 ILVB_YEAST
8 PsiBlast_PDB 77.9444% -24 - C4 -5INU 6.6 ILVB_YEAST
43 HHSearch 77.8145% -28 - C4 -5INU 12.6 ILVB_YEAST
14 PsiBlast_PDB 77.5040% -42 - C4 -5K6T 13.4 ILVB_ARATH
13 PsiBlast_PDB 77.2240% -41 - C4 -5K6R 13.3 ILVB_ARATH
11 PsiBlast_PDB 77.0140% -43 - C4 -5K2O 13.3 ILVB_ARATH
15 PsiBlast_PDB 76.9240% -42 - C4 -5K6Q 12.9 ?
12 PsiBlast_PDB 76.6040% -42 - C4 -5K3S 13.4 ILVB_ARATH