@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKQ3: (2017-10-28 )
MTKQALLEVSNLVREFPAGESTIQILKGIDLTIYEGELVAIVGQSGSGKSTLMNILGCLDRPTSGSYKVNGQETGKLEPDQLAQLRREYFGFIFQRYHLLGDLSAEGNVEVPAVYAGVTPADRKQRATALLTELGLGTKTQNRPSQLSGGQQQRVSIARALMNGGDVILADEPTGALDSHSGVEVMRILRELNAAGHTIILVTHDMQVAKNATRIIEISDGEIISDRPNVPDQSLEEVKSDPDAAPALQNKQKKGKSISAWRSTLDRLSEAFQMALLSMNAHRMRTFLTMLGIIIGIASVVTVVALGNGSQQQILSNISSLGTNTITVFQGRGFGDNSKTANFKTLVPADADALMTQPYVSAVSPMVSTSKTMRSQQNEANATINGVSNDYFDVKGLVFKDGQTFDQRSVRDRSQDVVIDTNTQKQFFSDGTNPIGQVVLLGSVPARIIGIVEPQTSGMGSDDTLNVYMPYTTVMSRMLGQAHVRNIVVRINDKYSTSAAENAIVNLLTQRHGAQDIFTMNSDSIRQTIEKTTSTMTLLVSAIAVISLVVGGIGVMNIMLVSVTERTQEIGVRMAVGARQSDILQQFLIEAILVCLIGGVLGVLLSLGLGQLINKFAGGNFAVAYSTTSIVAAFVCSTLIGVVFGFLPAKNAAKLDPVAALSRE

Atome Classification :

(44 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]




ANP_A_8(2ONJ)
Y1866_STAAM
[Raw transfer]




ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_J_5(4YMV)
?
[Raw transfer]




ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]




ATP_H_8(2FGK)

[Raw transfer]




ATP_J_5(4YMU)
?
[Raw transfer]




ATP_A_7(4YMU)
?
[Raw transfer]




ATP_E_5(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ATP_C_11(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_A_6(4YMV)
?
[Raw transfer]




ATP_H_8(2FGJ)

[Raw transfer]




ATP_B_10(1XEF)
HLYBP_ECOLX
[Raw transfer]




128_A_2(2PMK)

[Raw transfer]




ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]




ADP_B_6(2HYD)
Y1866_STAAM
[Raw transfer]




ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]




ATP_D_12(1XEF)

[Raw transfer]




ADP_B_2(2FFA)

[Raw transfer]




ADP_B_2(2FF7)

[Raw transfer]




ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]




12D_A_2(3B5J)

[Raw transfer]




ATP_F_6(2FGJ)
HLYBP_ECOLX
[Raw transfer]




ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]




ADP_A_3(1F3O)
Y796_METJA
[Raw transfer]




LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]




LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]




IPA_A_6(3TIF)
Y796_METJA
[Raw transfer]




2 PsiBlast_PDB 85.8253%-104 - C2 -5NIL - ? -
1 PsiBlast_PDB 85.8253%-104 - C2 -5NIK - ? -
143 HHSearch 84.5354%-102 - C2 -5NIL - ? -
6 PsiBlast_PDB 52.7645% -98 - C2 -2PCJ - LOLD_AQUAE -
7 PsiBlast_PDB 52.6545% -98 - C2 -2PCL - LOLD_AQUAE -
151 HHSearch 51.9338%-107 - C2 -3TUI - METN_ECOLI -
160 HHSearch 51.7343% -96 - C2 -2PCL - LOLD_AQUAE -
154 HHSearch 48.7930%-104 - C2 -4YER - ? -
152 HHSearch 48.6040%-113 - C2 -3DHW - METN_ECOLI -
134 Fugue 47.4131% -82 - C2 -3TUZ - METN_ECOLI -
11 PsiBlast_PDB 47.3939% -64 - C2 -3TUZ - METN_ECOLI -
100 PsiBlast_CBE 46.3033%-100 - C2 -3PUY - MALK_ECOLI -
111 PsiBlast_CBE 46.2433%-120 - C2 -2AWN - MALK_ECOLI -
29 PsiBlast_CBE 46.0639% -59 - C2 -3TUI - METN_ECOLI -
106 PsiBlast_CBE 45.8833% -97 - C2 -3PUV - MALK_ECOLI -
94 PsiBlast_CBE 45.7633%-101 - C2 -4KI0 - MALK_ECOLI -
149 HHSearch 45.6532%-114 - C2 -3RLF - MALK_ECOLI -
97 PsiBlast_CBE 45.4533%-101 - C2 -3PUZ - MALK_ECOLI -
24 PsiBlast_CBE 45.3739% -64 - C2 -3TUZ - METN_ECOLI -
10 PsiBlast_PDB 45.3439% -63 - C2 -3TUI - METN_ECOLI -
5 PsiBlast_PDB 42.3945% -17 - C2 -1F3O 5.8 Y796_METJA
22 PsiBlast_CBE 41.3144% -21 - C2 -3TIF 2.8 Y796_METJA
56 PsiBlast_CBE 41.2732% -28 - C2 -2FF7 4.7
69 PsiBlast_CBE 40.1431% -26 - C2 -2FFA 4.7
58 PsiBlast_CBE 40.0132% -30 - C2 -2PMK 4.9
15 PsiBlast_PDB 39.5236% -20 - C2 -4YMU 5.3 ?
31 PsiBlast_CBE 39.4636% -18 - C2 -4YMU 4.7 ?
73 PsiBlast_CBE 39.4531% -25 - C2 -1XEF 5.1 HLYBP_ECOLX
16 PsiBlast_PDB 39.1536% -21 - C2 -4YMV 5.2 ?
59 PsiBlast_CBE 38.9831% -23 - C2 -2FGK 5.4
72 PsiBlast_CBE 38.9731% -24 - C2 -1XEF 5.4 HLYBP_ECOLX
66 PsiBlast_CBE 38.5131% -21 - C2 -2FGJ 5.7 HLYBP_ECOLX
71 PsiBlast_CBE 38.4631% -24 - C2 -1XEF 5.2 HLYBP_ECOLX
64 PsiBlast_CBE 38.3831% -29 - C2 -3B5J 5.0
68 PsiBlast_CBE 38.3431% -22 - C2 -2FGJ 5.2 HLYBP_ECOLX
62 PsiBlast_CBE 38.0631% -18 - C2 -2FGK 5.8 HLYBP_ECOLX
70 PsiBlast_CBE 38.0131% -22 - C2 -1XEF 5.2
67 PsiBlast_CBE 37.8231% -16 - C2 -2FGJ 5.8 HLYBP_ECOLX
61 PsiBlast_CBE 37.7531% -21 - C2 -2FGK 5.6 HLYBP_ECOLX
65 PsiBlast_CBE 37.5831% -22 - C2 -2FGJ 5.2
30 PsiBlast_CBE 37.4236% -22 - C2 -4YMV 5.0 ?
60 PsiBlast_CBE 36.2031% -14 - C2 -2FGK 5.6 HLYBP_ECOLX
132 PsiBlast_CBE 31.8831% -24 - C2 -2HYD 5.5 Y1866_STAAM
131 PsiBlast_CBE 31.8531% -24 * C2 *2HYD 5.4 Y1866_STAAM