@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL03: (2017-10-30 )
MATSTPIVKSIRAIPVAGHDSMLLNLSGAHGPYFTRNILIIEDNSGNIGVGEIPGGEKILATLNDAKALVEGQPIGEYKNLLKKIQQTFADRDSGGRGNQTFDLRTTIHVVTAYESALLDLLGKHLNVNVASLLGEGQQRSEVEVLGYLFFIGDRKQTSLDYATSTQQHEWYKVRHEKALTPEAVQRLAEASYDRYGFKDFKLKGGVLQGEQEAEAVTAIARRFPDARVTLDPNGAWFLDEAIALGKHLKGVLAYAEDPCGAEQGYSSREIMAEFKRATGLPTATNMVATDWREMSHSIQLQAVDIPLADPHFWTLEGSVRVSQLCKMYNLTWGSHSNNHFDISLAMFTHVAAAAVGNVTAIDTHWIWQEGTDQLTKVPLEIKDGKIQVPTAPGLGVELDWDRINQAHELYKLKGLGARNDADAMQFLIPNWTFNNKKPCLVR

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GKR_A_5(1JCT)
GUDD_ECOLI
[Raw transfer]



GKR_B_6(1JCT)
GUDD_ECOLI
[Raw transfer]



GLR_A_4(3PWI)
GUDD_ECOLI
[Raw transfer]



GLR_B_7(3PWI)
GUDD_ECOLI
[Raw transfer]



TLA_A_2(3VFC)
?
[Raw transfer]



FMT_A_3(3VC6)
?
[Raw transfer]



FMT_A_2(3VDG)
?
[Raw transfer]



FMT_A_2(3VDG)
?
[Raw transfer]



FMT_A_4(3VC6)
?
[Raw transfer]



FMT_A_4(3VA8)
?
[Raw transfer]



FMT_A_4(3VA8)
?
[Raw transfer]
10 PsiBlast_PDB 83.6470% -19 - C1 -3PWG - GUDD_ECOLI -
71 HHSearch 83.4772% -21 - C1 -4G8T - ? -
22 PsiBlast_CBE 83.2772% -11 - C1 -4G8T - ? -
57 PsiBlast_CBE 83.2058% -83 - C1 -3P0W - ? -
6 PsiBlast_PDB 83.0771% -12 - C1 -4GYP - GUDD_ECOLI -
1 PsiBlast_PDB 83.0672% -12 - C1 -4G8T - ? -
23 PsiBlast_CBE 83.0272% -10 - C1 -4G8T - ? -
33 PsiBlast_CBE 82.9871% -13 - C1 -1EC8 - GUDD_ECOLI -
30 PsiBlast_CBE 82.8471% -16 - C1 -1EC9 - GUDD_ECOLI -
21 PsiBlast_CBE 82.8272% -10 - C1 -4G8T - ? -
70 HHSearch 82.7271% -21 - C1 -1EC9 - GUDD_ECOLI -
25 PsiBlast_CBE 82.5671% -13 - C1 -1ECQ - GUDD_ECOLI -
3 PsiBlast_PDB 82.5671% -10 - C1 -1EC8 - GUDD_ECOLI -
28 PsiBlast_CBE 82.5571% -13 - C1 -1EC9 - GUDD_ECOLI -
24 PsiBlast_CBE 82.5571% -13 - C1 -4GYP - GUDD_ECOLI -
31 PsiBlast_CBE 82.4971% -15 - C1 -1EC8 - GUDD_ECOLI -
39 PsiBlast_CBE 82.4170% -12 - C1 -1JDF - GUDD_ECOLI -
5 PsiBlast_PDB 82.3971% -13 - C1 -1ECQ - GUDD_ECOLI -
27 PsiBlast_CBE 82.3871% -14 - C1 -1ECQ - GUDD_ECOLI -
36 PsiBlast_CBE 82.2771% -13 - C1 -1EC7 - GUDD_ECOLI -
41 PsiBlast_CBE 81.5170% -15 - C1 -1JCT 4.1 GUDD_ECOLI
8 PsiBlast_PDB 81.4170% -14 - C1 -3PWI 4.5 GUDD_ECOLI
40 PsiBlast_CBE 80.9970% -11 - C1 -3PWI 3.6 GUDD_ECOLI
9 PsiBlast_PDB 80.9870% -14 - C1 -1JCT 4.0 GUDD_ECOLI
61 PsiBlast_CBE 61.0633% -30 - C1 -3VC6 3.8 ?
72 HHSearch 59.3032% -26 - C1 -3VDG 3.4 ?
69 PsiBlast_CBE 58.4832% -25 - C1 -3VDG 3.4 ?
68 PsiBlast_CBE 58.1332% -28 - C1 -3VFC 2.7 ?
78 HHSearch 57.1034% -8 - C1 -3VA8 3.5 ?
67 PsiBlast_CBE 54.2134% -2 - C1 -3VA8 3.5 ?