@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL29: (2017-10-31 )
MTSAEIREAFLRYFETQGHTRVASSSLVPANDPTLLFTNAGMNQFKDCFLGLEKRDYVRATTSQKCVRAGGKHNDLDNVGYTARHHTFFEMLGNFSFGDYFKRDALKFAWEFLTSEQWLALPKDKLYVTVYHTDDEAYDIWNKEIGLAPERIIRIGDNKGEKYASDNFWAMGDTGPCGPCSEIFFDHGEHIWGGLPGSPEEDGDRFIEIWNNVFMQFNRTADGVLHPLPAPSVDTGMGLERISAVLQHVNSNYDIDLFQHLLKAAANIIGIEDEGQPSLRVVADHARSCCFLIADGVNPSNEGRGYVLRRIIRRAVRHGNKLGATGTFFYKMLQPLIEVMGQAYPELEARREVIEATLIREEEQFAKTLEQGLKLLEGELAQLKDKTIPGATVFKLYDTYGFPTDLTADIARERGFIIDEAGFEVEMAAQRQRAHDAGKFAVDYNNIVKVEGETQFDGYTNTTGQGQIVAIYKDGVQVDEVSEGDEALIVLNQTPFYAESGGQIGDTGIFKNETGIFEVQDTKKSGGAFVHQGIVTVGNLKTSQNVEAIVKADIREATAHNHSATHLLHAALRQILGSHVQQKGSLVTSDILRFDFANDQPVSFEQLQQVERLVNAEIIANTAVTTELLDIETAKAKGAMMLFGEKYGDEVRVLSMGSVIDEKNFSIELCGGIHVKRTGDIGLFKITSEGGVAAGVRRIEAVTGTKALEVVQKADHDIQYINSLLKAQKDQTVERVQANVELVSALQKQIEQLNQKLANFQAADLIDQVQTIAGRQTLITTVQGVDAKALRNLHDSVKSKLENAVIVLAGVEGDKVSLLASVASQYTANLKAGDIIKHLATELGGKGGGKPDLAQGGAPLNEKFGQVMAALPAWLEQK

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

A5A_A_2(3HXU)
SYA_ECOLI
[Raw transfer]



A5A_B_9(4XEO)
SYAC_HUMAN
[Raw transfer]



A5A_A_2(4XEM)
SYAC_HUMAN
[Raw transfer]



5AL_A_2(3HXY)
SYA_ECOLI
[Raw transfer]



SSA_A_2(3HXW)
SYA_ECOLI
[Raw transfer]



A5A_A_3(4XEO)
SYAC_HUMAN
[Raw transfer]



A5A_A_2(4XEM)
SYAC_HUMAN
[Raw transfer]



SSA_A_3(3HY1)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_B_7(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_3(3HY0)
SYA_ECOLI
[Raw transfer]



G5A_A_4(3HXV)
SYA_ECOLI
[Raw transfer]



ACP_A_2(3HXX)
SYA_ECOLI
[Raw transfer]
5 PsiBlast_PDB 92.7972% -98 - C2 -3HXY 8.8 SYA_ECOLI
1 PsiBlast_PDB 92.6372% -97 - C2 -3HXU 8.9 SYA_ECOLI
22 PsiBlast_CBE 92.5672% -96 - C2 -3HY0 5.8 SYA_ECOLI
6 PsiBlast_PDB 92.3972% -96 - C2 -3HXZ - SYA_ECOLI -
4 PsiBlast_PDB 92.3972% -98 - C2 -3HXX 10.1 SYA_ECOLI
7 PsiBlast_PDB 92.1172% -97 - C2 -3HY0 5.7 SYA_ECOLI
24 PsiBlast_CBE 92.1072% -97 - C2 -3HXZ - SYA_ECOLI -
3 PsiBlast_PDB 92.0972% -96 - C2 -3HXW 8.7 SYA_ECOLI
23 PsiBlast_CBE 92.0372% -96 - C2 -3HXZ - SYA_ECOLI -
25 PsiBlast_CBE 91.9772% -96 - C2 -3HXZ - SYA_ECOLI -
2 PsiBlast_PDB 91.7572% -95 - C2 -3HXV 5.8 SYA_ECOLI
8 PsiBlast_PDB 90.8772% -93 - C2 -3HY1 7.6 SYA_ECOLI
21 PsiBlast_CBE 88.4072%-105 - C2 -3HY1 - SYA_ECOLI -
40 HHSearch 86.9272% -57 - C2 -3HXZ - SYA_ECOLI -
39 HHSearch 86.8372% -55 - C2 -3HY0 5.7 SYA_ECOLI
27 PsiBlast_CBE 70.5554% 0 - C- -1YFR - SYA_AQUAE -
26 PsiBlast_CBE 70.5554% 0 - C- -1YFS - SYA_AQUAE -
13 PsiBlast_PDB 70.5554% 0 - C- -3HTZ - SYA_AQUAE -
12 PsiBlast_PDB 70.5554% 0 - C- -1YGB - SYA_AQUAE -
11 PsiBlast_PDB 70.5554% 0 - C- -1YFT - SYA_AQUAE -
38 HHSearch 63.8049% -10 - C2 -4XEM 8.8 SYAC_HUMAN
17 PsiBlast_PDB 60.0147% 22 - C2 -4XEO 8.8 SYAC_HUMAN
15 PsiBlast_PDB 59.9647% 14 - C2 -4XEM 8.8 SYAC_HUMAN
35 PsiBlast_CBE 59.4647% 13 - C2 -4XEO 8.7 SYAC_HUMAN