@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL89: (2017-11-01 )
MANTSRSASQSTASSASAAHKRALVIVESPAKAKTINKYLGSQYIVKSSVGHVRDLPTGGSKATEKKPAARTKLTEAEKEQKANQALINRMGVDPEHGWQAHYEVLSGKENVVAELKKLAKDADAIYLATDLDREGEAIAWHLREVIGGDDSRYHRVVFNEITKNAIQEAFKQPTRLDLNRVNAQQARRFLDRVVGFMVSPLLWEKIARGLSAGRVQSVAVKLVVEREREIRAFIPEEYWQVFADTKAKKDDIRLEAVKQAGKTLKLKNKAETDALLDVLKGAEYKVAQREDKPTKVNPSAPYITSTLQQAASTRLGFSVKKTMMLAQRLYEAGFITYMRTDSTFLSDDAVSMVRAHIESQYGEKYLPAKPNRYGNKAGAQEAHEAIRPSNVALTGDQLAGVERDAQRLYDLIWRQFVACQMTPAEYLSSTLTVEAGNVELKAKGRTLVFDGFTKVRGANKSDDDIILPAIKVGEILKLEKLDPSQHFTKPPARFTEASLVKELEKRGIGRPSTYAAIISTIQERGYVKLENRRLFAEKMGEIVTDRLDESFNNLMNYAFTADLEGQLDRVATGERNWKELLDTFYGDFKKRLTNAQGEQGMRRNQPVEVPAVHCPECSRPMQIRTGTTGVFLGCSGYNLPPKERCKGTLNLTPVESLAALSDDDSAETADLMSKHRCPKCGTAMDSYVIDGGRKLHVCGNNPDCDGYELEEGEFKIKGYDGPTIPCDKCDGEMQLKTGRFGPYFACTSCDNTRKVLKNGQPAPPRVEPIKMEHLRSTKHDDYFVLRDGAAGLFLAASKFPKIRETRAPKVAELRSVADQLDPKYQFILQAPDVDPEGNPTIVKFSRKNQSQYVGSETPEGKQTKWSLIYQDGKWIEG

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
1 PsiBlast_PDB 74.7765% 40 - C1 -4RUL - TOP1_ECOLI -
5 PsiBlast_PDB 66.1267% 34 - C1 -1CY6 4.4 TOP1_ECOLI
9 PsiBlast_PDB 65.8267% 31 - C1 -3PWT - TOP1_ECOLI -
11 PsiBlast_PDB 65.3767% 34 - C1 -1MW9 - TOP1_ECOLI -
12 PsiBlast_PDB 64.6067% 33 - C1 -3PX7 14.8 TOP1_ECOLI
7 PsiBlast_PDB 64.6067% 6 - C1 -1CY0 - TOP1_ECOLI -
8 PsiBlast_PDB 64.4767% 36 - C1 -1CY4 4.1 TOP1_ECOLI
2 PsiBlast_PDB 64.4767% 33 - C1 -1ECL - TOP1_ECOLI -
10 PsiBlast_PDB 64.2567% 50 - C1 -1MW8 9.8 TOP1_ECOLI
4 PsiBlast_PDB 64.2567% 34 - C1 -1CY2 4.4 TOP1_ECOLI
6 PsiBlast_PDB 63.6267% 35 - C1 -1CY8 4.4 TOP1_ECOLI
3 PsiBlast_PDB 63.4667% 35 - C1 -1CY1 2.7 TOP1_ECOLI
35 HHSearch 62.5466% 53 - C1 -1MW9 - TOP1_ECOLI -
31 HHSearch 53.7442% 32 - C1 -5D5H - TOP1_MYCTU -
33 HHSearch 53.6239% -1 - C1 -2GAJ - TOP1_THEMA -
13 PsiBlast_PDB 52.1139% 17 - C1 -5D5H - TOP1_MYCTU -
15 PsiBlast_PDB 51.8937% 3 - C1 -2GAJ - TOP1_THEMA -
32 HHSearch 49.8539% -3 - C- -2GAI - TOP1_THEMA -
24 Fugue 49.3540% -1 - C- -2GAI - TOP1_THEMA -
14 PsiBlast_PDB 46.8437% 2 - C- -2GAI - TOP1_THEMA -