@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLC2: (2017-11-01 )
MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEYGAGRQGFLSMREIANSYFQADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFISLAGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEELQLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEAYNFVKAVMPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALVSIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVEAKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLSLSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSGVRVTVLPHPHLETPHYEIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAAAQKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAVSRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQREQHHQSHEQQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDRNNQQRPNRPNRHRDPSVLNENQNTPVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQSEIVALTPERRHVERVETTSTEVAQEPTPAPVVAEKAAVVETKEEAQPSQEAAQPQIKRASNDPRMRRRQQREAKHAKAATPSIAPSQIPTLAQHTIGSLIRHVYGEDCTVLIEQFGLVPTFNRALQKFAEQYASTLVVEVTAETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPPQAPAPRVANDPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAETQATVEPAQQPLELNQSTEVVQPEAAPAEEKATEETVAEAPAAKEPTPSKAASKAKAAAEETVAPTEATTDAESEDVKADKDKPSRPRRPRGRPPKKANPVAE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_R_2(2BX2)
RNE_ECOLI
[Raw transfer]
-
NACID_R_2(2BX2)
RNE_ECOLI
[Raw transfer]
-
NACID_H_8(2VRT)
RNE_ECOLI
[Raw transfer]
-
NACID_E_5(2VRT)
RNE_ECOLI
[Raw transfer]
-
NACID_R_2(2C0B)
RNE_ECOLI
[Raw transfer]
-
NACID_R_2(2BX2)
RNE_ECOLI
[Raw transfer]
-
NACID_R_2(2C4R)
RNE_ECOLI
[Raw transfer]
-
NACID_C_3(5F6C)
?
[Raw transfer]
-
NACID_E_4(5F6C)
RNE_ECOLI
[Raw transfer]
-
NACID_E_4(5F6C)
RNE_ECOLI
[Raw transfer]
-
NACID_G_7(2VRT)
RNE_ECOLI
[Raw transfer]
-
29 HHSearch 81.2561% -38 - C2 -2BX2 2.9 RNE_ECOLI
28 HHSearch 78.3460% 21 - C2 -5F6C 5.5 RNE_ECOLI
4 PsiBlast_PDB 78.1461% -38 - C2 -2C4R 13.8 RNE_ECOLI
27 PsiBlast_CBE 78.0660% 20 - C2 -5F6C 5.5 RNE_ECOLI
5 PsiBlast_PDB 76.9360% 24 - C2 -5F6C 5.1 ?
2 PsiBlast_PDB 76.2261% 24 - C2 -2BX2 2.9 RNE_ECOLI
24 PsiBlast_CBE 76.1261% 16 - C2 -2VRT 5.5 RNE_ECOLI
51 Fugue 74.9557% 51 - C2 -2BX2 4.9 RNE_ECOLI
1 PsiBlast_PDB 74.3861% 21 - C2 -2VMK - RNE_ECOLI -
26 PsiBlast_CBE 73.4061%-127 - C2 -2VRT 6.2 RNE_ECOLI
3 PsiBlast_PDB 72.6461% 27 - C2 -2C0B 14.1 RNE_ECOLI
25 PsiBlast_CBE 69.9461% -35 - C2 -2VRT 4.5 RNE_ECOLI
30 HHSearch 38.2951% - - C2 -4OXP - ? -
8 PsiBlast_PDB 37.3163% -63 - C2 -1SN8 - RNE_ECOLI -
20 PsiBlast_PDB 37.0733%-168 - C1 -2M4K - RPOE_BACSU -
35 HHSearch 36.9864% -65 - C2 -1SLJ - RNE_ECOLI -
50 HHSearch 36.8724%-158 - C2 -2K4K - GS13_BACSU -
52 Fugue 36.5462% -61 - C2 -1SMX - RNE_ECOLI -
9 PsiBlast_PDB 36.0263% -66 - C2 -1SLJ - RNE_ECOLI -
7 PsiBlast_PDB 35.8863% -62 - C- -1SMX - RNE_ECOLI -