@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLF5: (2017-11-02 )
MFANISISEFDPELAQAIASEDERQEAHIELIASENYCSPAVMEAQGSKLTNKYAEGYPGKRYYGGCEFVDVIEQMAIDRAKELFGADYANVQPHAGSQANSAVYLALLNPGDTVLGMSLAHGGHLTHGAKVSFSGKTYNAVQYGLNAETGEIDYEEVERLALEHKPRMIVAGFSAYSRVVDWQRFRDIADKVGAYLFVDMAHVAGLVAAGVYPNPVQIADVTTTTTHKTLRGPRSGLILAKANEEIEKKLQSAVFPGNQGGPLMHAIAAKAICFKVAMSDDFKAYQKQVVKNAQAMAEVFIARGYDVVSGGTDNHLFLLSLIKQDVTGKDADAWLGAAHITVNKNSVPNDPRSPFVTSGIRIGTPAVTTRGFGETEVRELAGWIADVIDSKGDEKVIADVKAKVEAVCAKFPVYAK

Atome Classification :

(62 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_C_6(4WXF)
GLYA_STRT1
[Raw transfer]




2BO_A_3(4WXG)
GLYA_STRT1
[Raw transfer]




PLG_A_3(4WXF)
GLYA_STRT1
[Raw transfer]




2BO_C_6(4WXG)
GLYA_STRT1
[Raw transfer]




FON_H_8(1KL2)
?
[Raw transfer]




GLY_A_2(2VGT)
?
[Raw transfer]




GLY_A_2(2VGW)
?
[Raw transfer]




PLP_A_3(2W7K)
?
[Raw transfer]




PLP_A_3(2VMO)
?
[Raw transfer]




PLP_A_3(2VGV)
?
[Raw transfer]




PLP_A_2(2W7G)
?
[Raw transfer]




PLP_A_3(2VIB)
?
[Raw transfer]




PLP_A_3(2VMW)
?
[Raw transfer]




PLP_A_3(2VMT)
?
[Raw transfer]




PLP_A_2(2W7L)
?
[Raw transfer]




PLP_A_3(2VIA)
?
[Raw transfer]




PLP_A_3(2W7M)
?
[Raw transfer]




PLP_A_3(2VGU)
?
[Raw transfer]




PLP_C_3(1YJZ)
?
[Raw transfer]




PLP_A_3(2W7J)
?
[Raw transfer]




ALO_A_3(2VMX)
?
[Raw transfer]




PLP_C_3(1KL1)
?
[Raw transfer]




PLP_A_2(2VMX)
?
[Raw transfer]




PLP_A_3(2VMP)
?
[Raw transfer]




PLP_A_3(2VMQ)
?
[Raw transfer]




PLP_A_3(2VGT)
?
[Raw transfer]




PLP_A_3(2VI9)
?
[Raw transfer]




PLP_C_3(1KKP)
?
[Raw transfer]




PLP_C_3(1YJS)
?
[Raw transfer]




GOL_B_5(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_A_3(2VMU)
?
[Raw transfer]




PLP_A_3(2W7F)
?
[Raw transfer]




PLP_A_3(2W7H)
?
[Raw transfer]




PLP_A_3(1KKJ)
?
[Raw transfer]




PLP_A_3(2W7E)
?
[Raw transfer]




PLP_A_3(2VMZ)
?
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_A_3(2VMS)
?
[Raw transfer]




PLP_A_2(2VGS)
?
[Raw transfer]




PLP_A_2(2W7D)
?
[Raw transfer]




GOL_A_3(4PVF)
GLYM_HUMAN
[Raw transfer]




PLP_B_7(1RV3)
GLYC_RABIT
[Raw transfer]




PLP_A_2(2VMR)
?
[Raw transfer]




PLP_A_2(2W7I)
?
[Raw transfer]




PLP_A_2(2VMV)
?
[Raw transfer]




ALO_A_3(2W7L)
?
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_5(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_2(2VI8)
?
[Raw transfer]




PLP_A_2(1BJ4)
GLYC_HUMAN
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_A_2(2VMN)
?
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_B_6(2DKJ)
GLYA_THET8
[Raw transfer]




PLP_A_3(2VGW)
?
[Raw transfer]




PLP_C_3(1YJY)
?
[Raw transfer]




FON_G_7(1KL2)
?
[Raw transfer]




FFO_B_8(2VMY)
?
[Raw transfer]




FFO_A_6(2VMY)
?
[Raw transfer]




PLP_A_2(3G8M)
GLYA_ECOLI
[Raw transfer]




1 PsiBlast_PDB 94.7599% -97 - C1 -5VMB - ? -
34 PsiBlast_CBE 85.8262% -91 - C1 -4OT8 - ? -
33 PsiBlast_CBE 85.3062% -90 - C1 -4OTL - ? -
36 PsiBlast_CBE 85.0062% -88 - C1 -4OT8 - ? -
9 PsiBlast_PDB 84.6262% -90 - C1 -4OTL - ? -
62 PsiBlast_CBE 84.2959% -93 - C1 -2VMT 4.5 ?
53 PsiBlast_CBE 84.2759% -94 - C1 -2VMP 4.4 ?
59 PsiBlast_CBE 84.0759% -92 - C1 -2W7J 4.3 ?
48 PsiBlast_CBE 83.8859% -93 - C1 -2VGT 4.0 ?
52 PsiBlast_CBE 83.6359% -93 - C1 -2VMQ 4.4 ?
16 PsiBlast_PDB 83.5959% -93 - C1 -2VI8 4.5 ?
63 PsiBlast_CBE 83.5359% -93 - C1 -2VMS 4.2 ?
45 PsiBlast_CBE 83.5159% -90 - C1 -2VGW 4.1 ?
18 PsiBlast_PDB 83.5159% -91 - C1 -2VIA 4.0 ?
64 PsiBlast_CBE 83.3859% -93 - C1 -2VMR 4.4 ?
49 PsiBlast_CBE 83.3859% -91 - C1 -2VGS 4.3 ?
56 PsiBlast_CBE 83.3559% -93 - C1 -2W7M 4.3 ?
54 PsiBlast_CBE 83.3559% -93 - C1 -2VMO 3.7 ?
47 PsiBlast_CBE 83.3159% -92 - C1 -2VGU 4.3 ?
66 PsiBlast_CBE 83.2859% -92 - C1 -2VMY 4.0 ?
51 PsiBlast_CBE 83.1559% -94 - C1 -1YJY 4.1 ?
61 PsiBlast_CBE 83.1259% -91 - C1 -2VMU 3.0 ?
50 PsiBlast_CBE 83.0959% -94 - C1 -1YJZ 3.8 ?
17 PsiBlast_PDB 83.0959% -92 - C1 -2VIB 3.7 ?
20 PsiBlast_PDB 82.9259% -94 - C1 -2W7D 4.5 ?
65 PsiBlast_CBE 82.8459% -94 - C1 -2VMZ 3.0 ?
55 PsiBlast_CBE 82.8259% -91 - C1 -2VMN 3.0 ?
41 PsiBlast_CBE 82.7659% -92 - C1 -2W7H 3.1 ?
68 PsiBlast_CBE 82.7459% -92 - C1 -2VMX 4.1 ?
69 PsiBlast_CBE 82.6859% -90 - C1 -2VMW 4.4 ?
11 PsiBlast_PDB 82.6760% -91 - C1 -1KKJ 3.2 ?
67 PsiBlast_CBE 82.6059% -92 - C1 -2VMY 4.1 ?
19 PsiBlast_PDB 82.5159% -91 - C1 -2VI9 3.9 ?
12 PsiBlast_PDB 82.4660% -89 - C1 -1KKP 4.4 ?
46 PsiBlast_CBE 82.4059% -92 - C1 -2VGV 4.3 ?
70 PsiBlast_CBE 82.3959% -92 - C1 -2VMV 4.3 ?
43 PsiBlast_CBE 82.2959% -90 - C1 -2W7F 3.3 ?
40 PsiBlast_CBE 82.2860% -90 - C1 -1KL2 5.0 ?
13 PsiBlast_PDB 82.1260% -93 - C1 -1KL1 4.5 ?
58 PsiBlast_CBE 82.0859% -91 - C1 -2W7K 4.3 ?
57 PsiBlast_CBE 82.0659% -93 - C1 -2W7L 4.4 ?
60 PsiBlast_CBE 81.9659% -91 - C1 -2W7I 4.4 ?
42 PsiBlast_CBE 81.9359% -90 - C1 -2W7G 3.1 ?
14 PsiBlast_PDB 81.9260% -90 - C1 -1KL2 4.1 ?
15 PsiBlast_PDB 81.9159% -93 - C1 -1YJS 4.4 ?
44 PsiBlast_CBE 81.8759% -90 - C1 -2W7E 4.3 ?
120 HHSearch 80.6457% -85 - C1 -2DKJ 3.1 GLYA_THET8
5 PsiBlast_PDB 78.2071% -43 - C1 -3G8M 2.8 GLYA_ECOLI
76 PsiBlast_CBE 78.1558% -49 - C1 -4WXF 5.3 GLYA_STRT1
75 PsiBlast_CBE 77.5958% -51 - C1 -4WXG 6.0 GLYA_STRT1
74 PsiBlast_CBE 77.1658% -50 - C1 -4WXG 6.6 GLYA_STRT1
77 PsiBlast_CBE 76.8358% -51 - C1 -4WXF 5.8 GLYA_STRT1
83 PsiBlast_CBE 75.1259% -83 - C1 -2DKJ 3.2 GLYA_THET8
82 PsiBlast_CBE 74.1059% -83 - C1 -2DKJ 3.1 GLYA_THET8
105 HHSearch 68.7945% -21 - C1 -1RV3 2.6 GLYC_RABIT
119 HHSearch 67.5657% -4 - C1 -2VI8 4.5 ?
122 HHSearch 67.4857% -2 * C1 *2VMN 3.0 ?
85 PsiBlast_CBE 67.3744% -18 - C1 -4PVF 2.3 GLYM_HUMAN
116 HHSearch 66.5354% -4 - C1 -4WXG 6.0 GLYA_STRT1
101 HHSearch 65.6947% 2 - C1 -4PVF 2.3 GLYM_HUMAN
84 PsiBlast_CBE 65.6644% -19 - C1 -4PVF 2.6 GLYM_HUMAN
125 Fugue 62.2845% 15 - C1 -1BJ4 2.5 GLYC_HUMAN