@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VLU2: (2017-11-04 )
MTDKSIKELALSVGRPVEKLLEQAREAGLPQRTADDIITTEQQDTLVNYLKKVHGQESGNTGKIALKRKTTSTAKVASTSGKAKTINVEVRKKQVFAKPNPEQIAAEAKARAEAEAKARAEQQAREAAEQKARLQTEQKAKATLDAMRAAHQQDSAAQSAPKAAVVVEKRGGGTVKPAPKPAETLEQKKAREAQTAQLKATEEAARRKAAEEAQQRTLEQMRKMASKYSNDDATATIRVIDDSPLASGLVGQAYEDSFNQEDREIKRGGATTNPRAGKKGGRRGQEEQSFVNHNKRGLKSSQANKHGFEKPVKKQVYDVEIGSSIVVADLAQKMAIKVREVIKTLMKMGELVNQNQTIDQDTAALVVEEMGHNPVLVSDTQAEDNLLEAAEEARGEQTTRPPVVTIMGHVDHGKTSLLDRIRRSKVAAGEAGGITQHIGAYHVETDKGIITFLDTPGHAAFTSMRARGAKATDIVVLVVAADDGVMPQTAEAIDHARAAGTPIIVAINKMDKESADPDRVLNELTTKEIVPEEWGGDVPVAKVSAHTGQGIDELLDLILIQSELMELKASAEGAAQGVVIEARVDKGRGAVTSILVQNGTLNIGDLVLAGSSYGRVRAMSDENGKPIKSAGPSIPVEILGLPEAPMAGDEVLVVNDEKKAREVADARADREREKRIERQSAMRLENIMASMGKKDVPTVNVVLRTDVRGTLEALNAALHELSTDEVKVRVISSGVGAITESDVILAESSEAVLLGFNVRADTAARQKSDQDGIDIRYYSIIYELIDDVKDAMSGKLAPEHRETILGVAQVREVFRSSKFGAAAGCMVMEGVIHRNKPIRVLRDDVVIFQGELESLRRYKDVVDEVRAGMECGLAVKGYNDIKPLDKIEVYDVQIVKRSL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GTP_A_3(4NCN)
IF2P_CHATD
[Raw transfer]




GSP_A_9(4TMZ)
IF2P_CHATD
[Raw transfer]




GTP_A_3(4TMW)
IF2P_CHATD
[Raw transfer]




GTP_A_3(4TMX)
IF2P_CHATD
[Raw transfer]




GTP_B_6(4TMW)

[Raw transfer]




GTP_B_13(4TMX)

[Raw transfer]




GTP_A_3(4TMX)
IF2P_CHATD
[Raw transfer]




GDP_A_2(4B47)
IF2_THET8
[Raw transfer]




GTP_A_2(4B48)
IF2_THET8
[Raw transfer]




GDP_A_2(4B44)
IF2_THET8
[Raw transfer]




GSP_B_3(4TMZ)

[Raw transfer]




GSP_B_3(4TN1)

[Raw transfer]




GTP_B_6(4TMW)

[Raw transfer]




GSP_B_3(4TMV)

[Raw transfer]




GSP_A_5(4TN1)
IF2P_CHATD
[Raw transfer]




GSP_B_12(4TMT)

[Raw transfer]




GNP_A_2(4ZU9)
?
[Raw transfer]




GSP_A_10(4TMV)
IF2P_CHATD
[Raw transfer]




GSP_A_3(4TMT)
IF2P_CHATD
[Raw transfer]




GNP_A_3(2C77)
EFTU2_THET8
[Raw transfer]




G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]




G4P_B_9(4ZCM)
TYPA_ECOLI
[Raw transfer]




GDP_A_2(2LKD)

[Raw transfer]




GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]




GOL_A_3(4B3X)
IF2_THET8
[Raw transfer]




GOL_A_7(4NCN)
IF2P_CHATD
[Raw transfer]




GDP_A_3(1EFM)
EFTU2_ECOLI
[Raw transfer]




EDO_B_16(4TMX)

[Raw transfer]




EDO_A_10(4TMX)
IF2P_CHATD
[Raw transfer]




2 PsiBlast_PDB 80.8349%-103 - C5 -5ME1 - IF2_ECOLI -
1 PsiBlast_PDB 80.6949%-102 - C5 -5ME0 - IF2_ECOLI -
4 PsiBlast_PDB 71.6141% -58 - C3 -3J4J - IF2_THET8 -
128 HHSearch 70.5042% -4 - C3 -3J4J - IF2_THET8 -
9 PsiBlast_PDB 69.6946%-111 - C5 -4B44 6.5 IF2_THET8
7 PsiBlast_PDB 68.0546%-108 - C5 -4B47 7.0 IF2_THET8
8 PsiBlast_PDB 68.0046%-107 - C5 -4B48 6.3 IF2_THET8
6 PsiBlast_PDB 67.7941% -66 - C5 -4KJZ - IF2_THET8 -
129 HHSearch 66.1264% -46 - C7 -1ZO1 - IF2_ECOLI -
10 PsiBlast_PDB 65.4146% -99 - C5 -4B3X 3.0 IF2_THET8
11 PsiBlast_PDB 64.9245%-109 - C5 -4B43 - IF2_THET8 -
21 PsiBlast_CBE 64.4741% -69 - C5 -4KJZ - IF2_THET8 -
3 PsiBlast_PDB 62.6364% -46 * C7 *1ZO1 - IF2_ECOLI -
137 HHSearch 59.8633% -1 * C3 *4N3S - IF2P_YEAST -
117 Fugue 58.7044% -15 - C5 -4B3X 3.0 IF2_THET8
136 HHSearch 58.3633% 22 - C3 -5FG3 - IF2P_AERPE -
138 HHSearch 57.4545% -29 - C5 -4B43 - IF2_THET8 -
118 Fugue 56.1528% 16 - C3 -1G7S - IF2P_METTH -
130 HHSearch 55.5644% 9 - C3 -3IZY - IF2M_BOVIN -
133 HHSearch 55.0531% 15 - C3 -1G7S - IF2P_METTH -
13 PsiBlast_PDB 55.0470%-132 - C5 -2LKD 5.3
145 HHSearch 47.4234% -5 - C5 -4TMX 9.3 IF2P_CHATD
146 HHSearch 47.2735% -6 - C5 -4TMW 8.8
31 PsiBlast_CBE 38.3433% 4 - C5 -4TN1 7.5 IF2P_CHATD
23 PsiBlast_CBE 37.8133% 4 - C5 -4TMZ 7.9 IF2P_CHATD
22 PsiBlast_CBE 37.5733% 3 - C5 -4TMZ 8.4
26 PsiBlast_CBE 37.4333% 4 - C5 -4TMV 8.8
25 PsiBlast_CBE 37.3333% 8 - C5 -4TMW 9.3 IF2P_CHATD
32 PsiBlast_CBE 37.2233% -1 - C5 -4TMT 9.0
27 PsiBlast_CBE 37.0333% 7 - C5 -4TMV 9.2 IF2P_CHATD
33 PsiBlast_CBE 36.9433% 5 - C5 -4TMT 9.4 IF2P_CHATD
28 PsiBlast_CBE 36.6933% 3 - C5 -4TMX 9.2
29 PsiBlast_CBE 36.4833% 5 - C5 -4TMX 9.3 IF2P_CHATD
30 PsiBlast_CBE 36.2633% -0 - C5 -4TN1 7.6
24 PsiBlast_CBE 35.9933% 3 - C5 -4TMW 8.8
34 PsiBlast_CBE 15.9540% - - C5 -1EFM 2.4 EFTU2_ECOLI